Factsheet for TraesCS5D01G286200.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G279100.1	Wheat	golgi	76.44	100.0
TraesCS5D01G286400.1	Wheat	cytosol	74.71	97.74
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	97.13	97.13
Os09t0501200-01	Rice	nucleus	71.26	93.23
EER97002	Sorghum	cytosol	69.54	90.98
Zm00001d006064_P002	Maize	cytosol	68.97	89.55
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	66.67	87.22
GSMUA_Achr7P19740_001	Banana	cytosol	66.09	86.47
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	66.09	86.47
GSMUA_Achr10P...	Banana	cytosol	66.09	86.47
KRH58920	Soybean	cytosol, plastid	66.09	86.47
KRH42824	Soybean	cytosol, plastid	66.09	86.47
KRH31095	Soybean	nucleus	66.09	86.47
KRH12802	Soybean	cytosol	66.09	86.47
KRH18320	Soybean	endoplasmic reticulum	66.09	86.47
HORVU5Hr1G075420.2	Barley	plastid	75.86	86.27
KRH67946	Soybean	endoplasmic reticulum	65.52	85.71
Solyc08g006900.2.1	Tomato	nucleus	65.52	85.71
PGSC0003DMT400022579	Potato	cytosol	65.52	85.71
KRH42825	Soybean	nucleus	64.94	84.96
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	71.84	84.46
Solyc02g070310.2.1	Tomato	nucleus, plastid	62.07	81.2
PGSC0003DMT400005838	Potato	cytosol	61.49	80.45
AT4G18100.1	Thale cress	cytosol	61.49	80.45
CDY61673	Canola	cytosol	60.34	78.95
CDY35163	Canola	cytosol	60.34	78.95
CDY08886	Canola	cytosol	60.34	78.95
CDY01520	Canola	extracellular	60.34	78.95
CDX90420	Canola	cytosol	60.34	78.95
CDX78825	Canola	cytosol	60.34	78.95
CDX76545	Canola	cytosol	60.34	78.95
Bra021023.1-P	Field mustard	cytosol	60.34	78.95
Bra013284.1-P	Field mustard	cytosol	60.34	78.95
Bra012616.1-P	Field mustard	cytosol	60.34	78.95
AT5G46430.1	Thale cress	cytosol	59.77	78.2
CDY33476	Canola	cytosol	59.77	78.2
CDY03219	Canola	cytosol	59.77	78.2
CDX77662	Canola	cytosol	59.77	78.2
Bra017545.1-P	Field mustard	cytosol	59.2	77.44
Zm00001d021018_P002	Maize	cytosol	68.97	77.42
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	72.41	77.3
PGSC0003DMT400054361	Potato	cytosol	33.33	76.32
VIT_00s0260g00080.t01	Wine grape	cytosol	58.05	74.81
GSMUA_Achr6P12040_001	Banana	cytosol	66.09	70.55
KRH12807	Soybean	cytosol	43.1	70.09
CDY35926	Canola	cytosol	27.01	38.21
CDY28057	Canola	cytosol	29.31	37.23
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	60.92	28.04

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PD003823	PFAM:PF01655	InterPro:Ribosomal_L32e
InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	EnsemblPlantsGene:TraesCS5D01G286200	EnsemblPlants:TraesCS5D01G286200.2	TIGR:cd00513

Description

No Description!

Coordinates

chr5D:+:386645893..386647499

Molecular Weight (calculated)

20192.6 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.510

Length

174 amino acids

Sequence
(BLAST)

001: MAVPLLKKAI VKKRVKHFKR AHSDRYIGLK QSWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN KFKKFVVHNV SELELLMMHN RYAFQNYSPS
101: LIAYEESCSY HLPCSVLDLA AFANDCHLSL NRTYCAEIAH NVSTQKRKAI VERAAQLDVV VTNKLARLRS QEDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.