Factsheet for PGSC0003DMT400054361

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070310.2.1	Tomato	nucleus, plastid	90.79	51.88
PGSC0003DMT400005838	Potato	cytosol	89.47	51.13
PGSC0003DMT400022579	Potato	cytosol	84.21	48.12
KRH12802	Soybean	cytosol	82.89	47.37
CDY33476	Canola	cytosol	81.58	46.62
KRH18320	Soybean	endoplasmic reticulum	81.58	46.62
AT4G18100.1	Thale cress	cytosol	81.58	46.62
CDY61673	Canola	cytosol	81.58	46.62
CDY35163	Canola	cytosol	81.58	46.62
CDY08886	Canola	cytosol	81.58	46.62
CDY03219	Canola	cytosol	81.58	46.62
CDY01520	Canola	extracellular	81.58	46.62
CDX90420	Canola	cytosol	81.58	46.62
CDX78825	Canola	cytosol	81.58	46.62
CDX77662	Canola	cytosol	81.58	46.62
CDX76545	Canola	cytosol	81.58	46.62
Bra021023.1-P	Field mustard	cytosol	81.58	46.62
Bra013284.1-P	Field mustard	cytosol	81.58	46.62
Bra012616.1-P	Field mustard	cytosol	81.58	46.62
AT5G46430.1	Thale cress	cytosol	81.58	46.62
Bra017545.1-P	Field mustard	cytosol	80.26	45.86
GSMUA_Achr7P19740_001	Banana	cytosol	80.26	45.86
KRH42824	Soybean	cytosol, plastid	78.95	45.11
KRH67946	Soybean	endoplasmic reticulum	78.95	45.11
KRH58920	Soybean	cytosol, plastid	78.95	45.11
KRH31095	Soybean	nucleus	78.95	45.11
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	78.95	45.11
GSMUA_Achr10P...	Banana	cytosol	78.95	45.11
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	77.63	44.36
Os09t0502000-01	Rice	nucleus	77.63	44.36
TraesCS5A01G279100.1	Wheat	golgi	76.32	43.61
KRH42825	Soybean	nucleus	76.32	43.61
Os09t0501200-01	Rice	nucleus	76.32	43.61
TraesCS7B01G152900.1	Wheat	golgi, unclear	75.0	42.86
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	75.0	42.54
Zm00001d049790_P007	Maize	cytosol	73.68	42.11
EER97002	Sorghum	cytosol	73.68	42.11
EER99136	Sorghum	cytosol	73.68	42.11
EES15331	Sorghum	cytosol	73.68	42.11
Zm00001d021020_P001	Maize	mitochondrion, plastid	73.68	42.11
Zm00001d006064_P002	Maize	cytosol	73.68	41.79
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	72.37	41.35
TraesCS5A01G279400.1	Wheat	unclear	72.37	41.35
TraesCS5D01G286400.1	Wheat	cytosol	72.37	41.35
TraesCS5B01G278700.1	Wheat	cytosol	72.37	41.35
HORVU7Hr1G052800.8	Barley	cytosol	72.37	41.35
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	75.0	38.51
GSMUA_Achr6P12040_001	Banana	cytosol	80.26	37.42
HORVU5Hr1G075500.3	Barley	cytosol	72.37	37.41
HORVU5Hr1G075420.2	Barley	plastid	75.0	37.25
Zm00001d021018_P002	Maize	cytosol	73.68	36.13
TraesCS7A01G256300.1	Wheat	cytosol	76.32	35.58
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	75.0	34.97
Os09t0501700-00	Rice	nucleus	77.63	34.71
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	76.32	33.33
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	76.32	33.33
KRH12807	Soybean	cytosol	42.11	29.91
Zm00001d031560_P001	Maize	plastid	73.68	27.32
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	89.47	17.99
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	1.32	2.38

Protein Annotations

EntrezGene:102589033	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M1BW66	PFAM:PD003823
PFAM:PF01655	EnsemblPlantsGene:PGSC0003DMG400021100	PGSC:PGSC0003DMG400021100	EnsemblPlants:PGSC0003DMT400054361	ScanProsite:PS00580	PANTHER:PTHR23413
InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI00029534FE
RefSeq:XP_015166620.1	SEG:seg	:	:	:	:

Description

Ly200 [Source:PGSC_GENE;Acc:PGSC0003DMG400021100]

Coordinates

chr2:-:29510852..29512410

Molecular Weight (calculated)

9021.3 Da

IEP (calculated)

12.125

GRAVY (calculated)

-0.903

Length

76 amino acids

Sequence
(BLAST)

1: MAVPLLNKRV VKKRVKRFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPK PKEFAA

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.