Factsheet for Os09t0502000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	31.58	100.0
Os09t0501200-01	Rice	nucleus	98.5	98.5
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	96.24	95.52
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	94.74	94.74
HORVU7Hr1G052800.8	Barley	cytosol	91.73	91.73
GSMUA_Achr7P19740_001	Banana	cytosol	90.23	90.23
GSMUA_Achr10P...	Banana	cytosol	90.23	90.23
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	89.47	89.47
Solyc08g006900.2.1	Tomato	nucleus	89.47	89.47
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	89.47	89.47
PGSC0003DMT400022579	Potato	cytosol	88.72	88.72
KRH58920	Soybean	cytosol, plastid	87.97	87.97
KRH42824	Soybean	cytosol, plastid	87.97	87.97
KRH31095	Soybean	nucleus	87.97	87.97
KRH67946	Soybean	endoplasmic reticulum	87.22	87.22
KRH18320	Soybean	endoplasmic reticulum	87.22	87.22
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	96.24	86.49
KRH42825	Soybean	nucleus	86.47	86.47
KRH12802	Soybean	cytosol	86.47	86.47
Solyc02g070310.2.1	Tomato	nucleus, plastid	82.71	82.71
AT4G18100.1	Thale cress	cytosol	81.95	81.95
CDY01520	Canola	extracellular	81.95	81.95
Bra012616.1-P	Field mustard	cytosol	81.95	81.95
Bra013284.1-P	Field mustard	cytosol	81.95	81.95
PGSC0003DMT400005838	Potato	cytosol	81.95	81.95
Bra021023.1-P	Field mustard	cytosol	81.95	81.95
CDX76545	Canola	cytosol	81.95	81.95
CDY08886	Canola	cytosol	81.95	81.95
CDX78825	Canola	cytosol	81.95	81.95
CDX90420	Canola	cytosol	81.95	81.95
CDY35163	Canola	cytosol	81.95	81.95
CDY61673	Canola	cytosol	81.95	81.95
CDY03219	Canola	cytosol	81.2	81.2
CDY33476	Canola	cytosol	81.2	81.2
CDX77662	Canola	cytosol	81.2	81.2
Bra017545.1-P	Field mustard	cytosol	80.45	80.45
AT5G46430.1	Thale cress	cytosol	79.7	79.7
Os09t0501700-00	Rice	nucleus	99.25	77.65
PGSC0003DMT400054361	Potato	cytosol	44.36	77.63
GSMUA_Achr6P12040_001	Banana	cytosol	90.98	74.23
VIT_00s0260g00080.t01	Wine grape	cytosol	75.19	74.07
KRH12807	Soybean	cytosol	55.64	69.16
CDY35926	Canola	cytosol	36.09	39.02
CDY28057	Canola	cytosol	39.1	37.96
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	81.2	28.57

Protein Annotations

MapMan:17.1.2.1.33	EntrezGene:4347488	EMBL:AK120524	ProteinID:BAF25498.1	ProteinID:BAT08821.1	ProteinID:EAZ45266.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	EnsemblPlantsGene:Os09g0502000	EnsemblPlants:Os09t0502000-01
PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413	UniProt:Q0J0Q8	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf
SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0000DD97DB	RefSeq:XP_015651355.1	SEG:seg	:

Description

rpL32_9.3Similar to Ribosomal L32. (Os09t0502000-01)

Coordinates

chr9:-:19418967..19421062

Molecular Weight (calculated)

15675.4 Da

IEP (calculated)

11.204

GRAVY (calculated)

-0.745

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKI VKKRVKQFKR PHSDRYIGLK TSWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN KFKKFVVHNV SELELLMMHN RTYCAEIAHN
101: VSTKKRKEIV ERAAQLDIVV TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.