CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76545	Canola	cytosol	100.0	100.0
CDX78825	Canola	cytosol	100.0	100.0
CDX90420	Canola	cytosol	100.0	100.0
CDY08886	Canola	cytosol	100.0	100.0
CDY35163	Canola	cytosol	100.0	100.0
CDY61673	Canola	cytosol	100.0	100.0
CDX77662	Canola	cytosol	98.5	98.5
CDY03219	Canola	cytosol	98.5	98.5
AT4G18100.1	Thale cress	cytosol	98.5	98.5
CDY33476	Canola	cytosol	98.5	98.5
Solyc02g070310.2.1	Tomato	nucleus, plastid	87.22	87.22
PGSC0003DMT400005838	Potato	cytosol	86.47	86.47
Solyc08g006900.2.1	Tomato	nucleus	82.71	82.71
GSMUA_Achr10P...	Banana	cytosol	81.95	81.95
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	81.95	81.95
PGSC0003DMT400022579	Potato	cytosol	81.95	81.95
Os09t0502000-01	Rice	nucleus	81.95	81.95
KRH18320	Soybean	endoplasmic reticulum	81.95	81.95
PGSC0003DMT400054361	Potato	cytosol	46.62	81.58
GSMUA_Achr7P19740_001	Banana	cytosol	81.2	81.2
KRH12802	Soybean	cytosol	81.2	81.2
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	25.56	80.95
TraesCS7B01G152900.1	Wheat	golgi, unclear	80.45	80.45
KRH67946	Soybean	endoplasmic reticulum	80.45	80.45
Os09t0501200-01	Rice	nucleus	80.45	80.45
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	80.45	80.45
KRH58920	Soybean	cytosol, plastid	80.45	80.45
KRH42824	Soybean	cytosol, plastid	80.45	80.45
KRH31095	Soybean	nucleus	80.45	80.45
EES15331	Sorghum	cytosol	80.45	80.45
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	80.45	79.85
Zm00001d049790_P007	Maize	cytosol	79.7	79.7
KRH42825	Soybean	nucleus	79.7	79.7
Zm00001d021020_P001	Maize	mitochondrion, plastid	79.7	79.7
EER99136	Sorghum	cytosol	78.95	78.95
EER97002	Sorghum	cytosol	78.95	78.95
TraesCS5A01G279100.1	Wheat	golgi	78.95	78.95
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	78.95	78.95
Zm00001d006064_P002	Maize	cytosol	78.2	77.61
HORVU7Hr1G052800.8	Barley	cytosol	76.69	76.69
TraesCS5A01G279400.1	Wheat	unclear	76.69	76.69
TraesCS5B01G278700.1	Wheat	cytosol	76.69	76.69
TraesCS5D01G286400.1	Wheat	cytosol	76.69	76.69
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	80.45	72.3
HORVU5Hr1G075500.3	Barley	cytosol	76.69	69.39
KRH12807	Soybean	cytosol	54.89	68.22
HORVU5Hr1G075420.2	Barley	plastid	78.2	67.97
Zm00001d021018_P002	Maize	cytosol	78.2	67.1
GSMUA_Achr6P12040_001	Banana	cytosol	81.95	66.87
TraesCS7A01G256300.1	Wheat	cytosol	81.2	66.26
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	80.45	65.64
Os09t0501700-00	Rice	nucleus	81.2	63.53
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	78.95	60.34
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	78.95	60.34
Zm00001d031560_P001	Maize	plastid	79.7	51.71
CDY28057	Canola	cytosol	39.1	37.96
CDY35926	Canola	cytosol	34.59	37.4
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	83.46	29.37

Protein Annotations

MapMan:17.1.2.1.33	GO:A0A078CI72	UniProt:A0A078CI72	EnsemblPlants:CDY01520	ProteinID:CDY01520	ProteinID:CDY01520.1
ProteinID:CDY08886.1	ProteinID:CDY35163.1	ProteinID:CDY61673.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00112545001
PFAM:PD003823	PFAM:PF01655	ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS
InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	UniParc:UPI0001BA9029	:	:

Description

BnaC07g35100DBnaA01g08920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CI72]

Coordinates

chrLK031927:-:350450..351425

Molecular Weight (calculated)

15504.1 Da

IEP (calculated)

11.539

GRAVY (calculated)

-0.713

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SDLELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDIVV TNRLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.