Factsheet for Solyc02g070310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005838	Potato	cytosol	99.25	99.25
PGSC0003DMT400054361	Potato	cytosol	51.88	90.79
Solyc08g006900.2.1	Tomato	nucleus	90.23	90.23
AT4G18100.1	Thale cress	cytosol	88.72	88.72
Bra012616.1-P	Field mustard	cytosol	87.22	87.22
Bra013284.1-P	Field mustard	cytosol	87.22	87.22
Bra021023.1-P	Field mustard	cytosol	87.22	87.22
CDX76545	Canola	cytosol	87.22	87.22
CDX78825	Canola	cytosol	87.22	87.22
CDX90420	Canola	cytosol	87.22	87.22
CDY01520	Canola	extracellular	87.22	87.22
CDY08886	Canola	cytosol	87.22	87.22
CDY61673	Canola	cytosol	87.22	87.22
CDY35163	Canola	cytosol	87.22	87.22
AT5G46430.1	Thale cress	cytosol	86.47	86.47
CDY33476	Canola	cytosol	86.47	86.47
CDY03219	Canola	cytosol	86.47	86.47
CDX77662	Canola	cytosol	86.47	86.47
Bra017545.1-P	Field mustard	cytosol	85.71	85.71
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	84.96	84.96
KRH18320	Soybean	endoplasmic reticulum	84.21	84.21
KRH12802	Soybean	cytosol	83.46	83.46
Os09t0502000-01	Rice	nucleus	82.71	82.71
Os09t0501200-01	Rice	nucleus	82.71	82.71
KRH67946	Soybean	endoplasmic reticulum	81.95	81.95
KRH58920	Soybean	cytosol, plastid	81.95	81.95
KRH42824	Soybean	cytosol, plastid	81.95	81.95
KRH31095	Soybean	nucleus	81.95	81.95
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	81.95	81.95
TraesCS5A01G279100.1	Wheat	golgi	81.2	81.2
GSMUA_Achr10P...	Banana	cytosol	81.2	81.2
GSMUA_Achr7P19740_001	Banana	cytosol	81.2	81.2
EER97002	Sorghum	cytosol	81.2	81.2
Zm00001d049790_P007	Maize	cytosol	80.45	80.45
TraesCS7B01G152900.1	Wheat	golgi, unclear	80.45	80.45
KRH42825	Soybean	nucleus	80.45	80.45
Zm00001d021020_P001	Maize	mitochondrion, plastid	80.45	80.45
Zm00001d006064_P002	Maize	cytosol	80.45	79.85
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	80.45	79.85
EES15331	Sorghum	cytosol	79.7	79.7
EER99136	Sorghum	cytosol	79.7	79.7
TraesCS5A01G279400.1	Wheat	unclear	78.95	78.95
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	78.95	78.95
TraesCS5B01G278700.1	Wheat	cytosol	78.95	78.95
TraesCS5D01G286400.1	Wheat	cytosol	78.95	78.95
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	24.81	78.57
HORVU7Hr1G052800.8	Barley	cytosol	77.44	77.44
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	80.45	72.3
HORVU5Hr1G075500.3	Barley	cytosol	78.95	71.43
HORVU5Hr1G075420.2	Barley	plastid	80.45	69.93
Zm00001d021018_P002	Maize	cytosol	80.45	69.03
KRH12807	Soybean	cytosol	54.89	68.22
TraesCS7A01G256300.1	Wheat	cytosol	81.2	66.26
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	80.45	65.64
GSMUA_Achr6P12040_001	Banana	cytosol	80.45	65.64
Os09t0501700-00	Rice	nucleus	81.95	64.12
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	81.2	62.07
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	81.2	62.07
Zm00001d031560_P001	Maize	plastid	80.45	52.2
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	95.49	33.6

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:K4B813
PFAM:PD003823	PFAM:PF01655	ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS
InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	EnsemblPlantsGene:Solyc02g070310.2	EnsemblPlants:Solyc02g070310.2.1	UniParc:UPI00005BA45A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:40093046..40094826

Molecular Weight (calculated)

15637.3 Da

IEP (calculated)

11.309

GRAVY (calculated)

-0.704

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLNKKV VKKRVKRFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPN GFKKFVVHNA SELEILMMHN RTYCAEIAHN
101: VSTRKRKEIV ERAAQLDVVI TNKLARLHSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.