Factsheet for Solyc08g006900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022579	Potato	cytosol	99.25	99.25
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	30.08	95.24
Solyc02g070310.2.1	Tomato	nucleus, plastid	90.23	90.23
Os09t0502000-01	Rice	nucleus	89.47	89.47
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	89.47	89.47
Zm00001d049790_P007	Maize	cytosol	88.72	88.72
GSMUA_Achr10P...	Banana	cytosol	88.72	88.72
Zm00001d021020_P001	Maize	mitochondrion, plastid	88.72	88.72
Os09t0501200-01	Rice	nucleus	87.97	87.97
KRH18320	Soybean	endoplasmic reticulum	87.97	87.97
EER97002	Sorghum	cytosol	87.97	87.97
EER99136	Sorghum	cytosol	87.97	87.97
EES15331	Sorghum	cytosol	87.97	87.97
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	87.97	87.97
GSMUA_Achr7P19740_001	Banana	cytosol	87.97	87.97
KRH12802	Soybean	cytosol	87.22	87.22
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	87.22	86.57
Zm00001d006064_P002	Maize	cytosol	87.22	86.57
TraesCS7B01G152900.1	Wheat	golgi, unclear	86.47	86.47
KRH58920	Soybean	cytosol, plastid	86.47	86.47
KRH42824	Soybean	cytosol, plastid	86.47	86.47
KRH31095	Soybean	nucleus	86.47	86.47
TraesCS5A01G279100.1	Wheat	golgi	85.71	85.71
KRH67946	Soybean	endoplasmic reticulum	85.71	85.71
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	85.71	85.71
KRH42825	Soybean	nucleus	84.96	84.96
AT4G18100.1	Thale cress	cytosol	84.21	84.21
TraesCS5A01G279400.1	Wheat	unclear	83.46	83.46
HORVU7Hr1G052800.8	Barley	cytosol	83.46	83.46
TraesCS5B01G278700.1	Wheat	cytosol	83.46	83.46
TraesCS5D01G286400.1	Wheat	cytosol	83.46	83.46
CDY08886	Canola	cytosol	82.71	82.71
CDX78825	Canola	cytosol	82.71	82.71
CDX90420	Canola	cytosol	82.71	82.71
CDY01520	Canola	extracellular	82.71	82.71
CDX76545	Canola	cytosol	82.71	82.71
CDY35163	Canola	cytosol	82.71	82.71
Bra021023.1-P	Field mustard	cytosol	82.71	82.71
CDY61673	Canola	cytosol	82.71	82.71
Bra013284.1-P	Field mustard	cytosol	82.71	82.71
Bra012616.1-P	Field mustard	cytosol	82.71	82.71
AT5G46430.1	Thale cress	cytosol	81.95	81.95
CDX77662	Canola	cytosol	81.95	81.95
CDY03219	Canola	cytosol	81.95	81.95
CDY33476	Canola	cytosol	81.95	81.95
Bra017545.1-P	Field mustard	cytosol	81.2	81.2
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	87.22	78.38
HORVU5Hr1G075500.3	Barley	cytosol	83.46	75.51
Zm00001d021018_P002	Maize	cytosol	87.22	74.84
HORVU5Hr1G075420.2	Barley	plastid	84.96	73.86
TraesCS7A01G256300.1	Wheat	cytosol	87.97	71.78
GSMUA_Achr6P12040_001	Banana	cytosol	87.97	71.78
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	87.22	71.17
Os09t0501700-00	Rice	nucleus	88.72	69.41
KRH12807	Soybean	cytosol	54.89	68.22
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	85.71	65.52
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	85.71	65.52
Zm00001d031560_P001	Maize	plastid	88.72	57.56

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:K4CIH8
PFAM:PD003823	PFAM:PF01655	ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS
InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	EnsemblPlantsGene:Solyc08g006900.2	EnsemblPlants:Solyc08g006900.2.1	UniParc:UPI000276C243
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:1461250..1464221

Molecular Weight (calculated)

15586.4 Da

IEP (calculated)

11.262

GRAVY (calculated)

-0.705

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTKKV VKKRVKQFKR PQCDRRITVK PSWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPN GFKKFVVHNA SELEILMMHN RTYCAEIAHN
101: VSTKKRKEIV ERAAQLDVVI TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.