Factsheet for TraesCS7B01G152900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	98.5	97.76
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	30.83	97.62
TraesCS5B01G278700.1	Wheat	cytosol	93.98	93.98
Zm00001d049790_P007	Maize	cytosol	93.23	93.23
EES15331	Sorghum	cytosol	92.48	92.48
GSMUA_Achr10P...	Banana	cytosol	88.72	88.72
GSMUA_Achr7P19740_001	Banana	cytosol	87.97	87.97
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	87.97	87.97
Solyc08g006900.2.1	Tomato	nucleus	86.47	86.47
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	86.47	86.47
KRH58920	Soybean	cytosol, plastid	86.47	86.47
KRH42824	Soybean	cytosol, plastid	86.47	86.47
KRH31095	Soybean	nucleus	86.47	86.47
KRH18320	Soybean	endoplasmic reticulum	86.47	86.47
PGSC0003DMT400022579	Potato	cytosol	85.71	85.71
KRH67946	Soybean	endoplasmic reticulum	85.71	85.71
KRH12802	Soybean	cytosol	85.71	85.71
KRH42825	Soybean	nucleus	84.96	84.96
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	99.25	80.98
CDY01520	Canola	extracellular	80.45	80.45
Bra021023.1-P	Field mustard	cytosol	80.45	80.45
Solyc02g070310.2.1	Tomato	nucleus, plastid	80.45	80.45
CDX76545	Canola	cytosol	80.45	80.45
CDX78825	Canola	cytosol	80.45	80.45
CDX90420	Canola	cytosol	80.45	80.45
CDY08886	Canola	cytosol	80.45	80.45
Bra013284.1-P	Field mustard	cytosol	80.45	80.45
AT4G18100.1	Thale cress	cytosol	80.45	80.45
Bra012616.1-P	Field mustard	cytosol	80.45	80.45
CDY35163	Canola	cytosol	80.45	80.45
CDY61673	Canola	cytosol	80.45	80.45
TraesCS7A01G256300.1	Wheat	cytosol	98.5	80.37
CDY03219	Canola	cytosol	79.7	79.7
CDX77662	Canola	cytosol	79.7	79.7
PGSC0003DMT400005838	Potato	cytosol	79.7	79.7
CDY33476	Canola	cytosol	79.7	79.7
Bra017545.1-P	Field mustard	cytosol	78.95	78.95
AT5G46430.1	Thale cress	cytosol	78.2	78.2
PGSC0003DMT400054361	Potato	cytosol	42.86	75.0
VIT_00s0260g00080.t01	Wine grape	cytosol	75.94	74.81
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	95.49	72.99
GSMUA_Achr6P12040_001	Banana	cytosol	87.97	71.78
KRH12807	Soybean	cytosol	56.39	70.09
Zm00001d031560_P001	Maize	plastid	93.23	60.49
CDY35926	Canola	cytosol	35.34	38.21
CDY28057	Canola	cytosol	38.35	37.23
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	78.95	27.78

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413
InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	EnsemblPlantsGene:TraesCS7B01G152900	EnsemblPlants:TraesCS7B01G152900.1
TIGR:cd00513	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:203279792..203282706

Molecular Weight (calculated)

15699.4 Da

IEP (calculated)

11.268

GRAVY (calculated)

-0.743

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLTRKI VKKRVKHFKR AHSDRYIGLK QSWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN KFKKFVVHNV SELELLMMHN RTYCAEIAHN
101: VSTKKRKDIV ERAAQLDIVV TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.