Factsheet for VIT_10s0003g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	30.08	95.24
KRH31095	Soybean	nucleus	94.74	94.74
KRH42824	Soybean	cytosol, plastid	94.74	94.74
KRH58920	Soybean	cytosol, plastid	94.74	94.74
KRH67946	Soybean	endoplasmic reticulum	93.98	93.98
KRH42825	Soybean	nucleus	93.23	93.23
KRH18320	Soybean	endoplasmic reticulum	92.48	92.48
GSMUA_Achr10P...	Banana	cytosol	91.73	91.73
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	91.73	91.73
GSMUA_Achr7P19740_001	Banana	cytosol	91.73	91.73
KRH12802	Soybean	cytosol	91.73	91.73
PGSC0003DMT400022579	Potato	cytosol	90.23	90.23
Os09t0501200-01	Rice	nucleus	89.47	89.47
Os09t0502000-01	Rice	nucleus	89.47	89.47
Solyc08g006900.2.1	Tomato	nucleus	89.47	89.47
EER97002	Sorghum	cytosol	87.97	87.97
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	87.97	87.31
TraesCS5A01G279100.1	Wheat	golgi	87.22	87.22
Zm00001d021020_P001	Maize	mitochondrion, plastid	87.22	87.22
Zm00001d049790_P007	Maize	cytosol	87.22	87.22
Zm00001d006064_P002	Maize	cytosol	87.22	86.57
EER99136	Sorghum	cytosol	86.47	86.47
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	86.47	86.47
EES15331	Sorghum	cytosol	86.47	86.47
TraesCS7B01G152900.1	Wheat	golgi, unclear	86.47	86.47
TraesCS5D01G286400.1	Wheat	cytosol	84.96	84.96
TraesCS5B01G278700.1	Wheat	cytosol	84.96	84.96
TraesCS5A01G279400.1	Wheat	unclear	84.96	84.96
Solyc02g070310.2.1	Tomato	nucleus, plastid	84.96	84.96
HORVU7Hr1G052800.8	Barley	cytosol	84.21	84.21
PGSC0003DMT400005838	Potato	cytosol	84.21	84.21
AT4G18100.1	Thale cress	cytosol	81.95	81.95
CDX90420	Canola	cytosol	80.45	80.45
CDY61673	Canola	cytosol	80.45	80.45
Bra012616.1-P	Field mustard	cytosol	80.45	80.45
Bra013284.1-P	Field mustard	cytosol	80.45	80.45
CDY35163	Canola	cytosol	80.45	80.45
CDY33476	Canola	cytosol	80.45	80.45
CDY08886	Canola	cytosol	80.45	80.45
Bra021023.1-P	Field mustard	cytosol	80.45	80.45
CDY03219	Canola	cytosol	80.45	80.45
CDX76545	Canola	cytosol	80.45	80.45
CDX77662	Canola	cytosol	80.45	80.45
CDX78825	Canola	cytosol	80.45	80.45
CDY01520	Canola	extracellular	80.45	80.45
Bra017545.1-P	Field mustard	cytosol	79.7	79.7
AT5G46430.1	Thale cress	cytosol	79.7	79.7
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	87.97	79.05
VIT_00s0260g00080.t01	Wine grape	cytosol	78.95	77.78
PGSC0003DMT400054361	Potato	cytosol	44.36	77.63
HORVU5Hr1G075500.3	Barley	cytosol	84.96	76.87
HORVU5Hr1G075420.2	Barley	plastid	86.47	75.16
Zm00001d021018_P002	Maize	cytosol	87.22	74.84
GSMUA_Achr6P12040_001	Banana	cytosol	90.98	74.23
TraesCS7A01G256300.1	Wheat	cytosol	87.97	71.78
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	87.22	71.17
KRH12807	Soybean	cytosol	57.14	71.03
Os09t0501700-00	Rice	nucleus	88.72	69.41
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	87.22	66.67
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	87.22	66.67
Zm00001d031560_P001	Maize	plastid	87.22	56.59
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	83.46	29.37

Protein Annotations

EntrezGene:100243581	wikigene:100243581	MapMan:17.1.2.1.33	UniProt:A5BD13	EMBL:AM455011	ProteinID:CAN74433
ProteinID:CAN74433.1	ProteinID:CBI30810	ProteinID:CBI30810.3	EMBL:FN595992	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	EntrezGene:LOC100243581	wikigene:LOC100243581	PFAM:PD003823	PFAM:PF01655
PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	TIGR:TC52770
TIGR:TC53301	UniParc:UPI00015208FC	ArrayExpress:VIT_10s0003g02650	EnsemblPlantsGene:VIT_10s0003g02650	EnsemblPlants:VIT_10s0003g02650.t01	RefSeq:XP_002272873
RefSeq:XP_002272873.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:4633553..4636903

Molecular Weight (calculated)

15602.3 Da

IEP (calculated)

11.385

GRAVY (calculated)

-0.812

Length

133 amino acids

Sequence
(BLAST)

001: MAVPLLSKKI VKKRVKKFKR PQSDRKVSVK TNWRRPKGID SRVRRKFKGC TLMPNIGYGS DKKTRHYLPN GFKKFVVHNA QELELLMMHN RTYCAEIAHN
101: VSTRKRKEIV ERAAQLDVVV TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.