Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G48100.1 | Thale cress | cytosol | 47.29 | 66.3 |
| KRH54462 | Soybean | cytosol | 52.33 | 66.18 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 46.9 | 66.12 |
| Bra033773.1-P | Field mustard | nucleus | 46.12 | 66.11 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 45.74 | 65.92 |
| Bra018084.1-P | Field mustard | cytosol, nucleus, plastid | 45.74 | 65.92 |
| KRH63457 | Soybean | cytosol | 51.94 | 65.69 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 46.51 | 65.22 |
| KRH03376 | Soybean | nucleus | 52.33 | 65.22 |
| Solyc03g113720.2.1 | Tomato | nucleus | 49.22 | 65.13 |
| CDY36905 | Canola | nucleus | 46.12 | 65.03 |
| CDY70164 | Canola | nucleus | 46.12 | 65.03 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 45.74 | 64.48 |
| AT5G62920.1 | Thale cress | cytosol | 46.12 | 63.98 |
| KRH57009 | Soybean | nucleus | 51.94 | 63.51 |
| PGSC0003DMT400063187 | Potato | cytosol | 48.84 | 63.0 |
| VIT_13s0067g03480.t01 | Wine grape | cytosol | 29.46 | 61.79 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 41.86 | 61.02 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 43.41 | 60.87 |
| VIT_13s0067g03450.t01 | Wine grape | cytosol | 32.95 | 60.71 |
| Bra015885.1-P | Field mustard | cytosol, golgi, peroxisome | 43.41 | 60.54 |
| CDY00336 | Canola | nucleus | 44.57 | 60.53 |
| CDX84366 | Canola | nucleus | 44.57 | 60.53 |
| Bra010132.1-P | Field mustard | nucleus | 44.57 | 60.53 |
| AT1G74890.1 | Thale cress | nucleus | 48.06 | 60.19 |
| VIT_01s0026g00940.t01 | Wine grape | nucleus | 50.78 | 59.28 |
| VIT_13s0067g03490.t01 | Wine grape | nucleus | 32.95 | 58.22 |
| CDX96681 | Canola | cytosol | 46.12 | 57.49 |
| Bra016526.1-P | Field mustard | cytosol | 46.12 | 57.49 |
| CDX68161 | Canola | cytosol | 43.8 | 57.36 |
| Bra003782.1-P | Field mustard | cytosol | 43.8 | 57.36 |
| AT1G19050.1 | Thale cress | cytosol | 45.35 | 56.8 |
| CDX83788 | Canola | cytosol | 46.51 | 56.6 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 47.29 | 55.96 |
| Bra019524.1-P | Field mustard | cytosol | 28.68 | 55.22 |
| CDY41014 | Canola | nucleus | 44.96 | 54.21 |
| CDY26701 | Canola | nucleus | 44.19 | 53.52 |
| Bra025708.1-P | Field mustard | nucleus | 44.19 | 53.52 |
| VIT_13s0067g03070.t01 | Wine grape | cytosol | 31.4 | 52.94 |
| VIT_13s0067g03460.t01 | Wine grape | nucleus | 31.78 | 50.31 |
| VIT_13s0067g03510.t01 | Wine grape | nucleus | 35.27 | 46.19 |
| VIT_13s0067g03430.t01 | Wine grape | nucleus | 36.05 | 42.27 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 35.66 | 42.2 |
| VIT_18s0001g02540.t01 | Wine grape | nucleus | 31.78 | 35.34 |
Protein Annotations
| EntrezGene:100258759 | wikigene:100258759 | MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | ProteinID:ACO88942 | ProteinID:ACO88942.1 |
| ProteinID:CCB43016 | ProteinID:CCB43016.1 | InterPro:CheY-like_superfamily | UniProt:F6GSX5 | EMBL:FJ822981 | EMBL:FN594950 |
| GO:GO:0000160 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:IPR001789 | EntrezGene:LOC100258759 | wikigene:LOC100258759 | PFAM:PF00072 |
| PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF36 | SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| UniParc:UPI00015C8401 | ArrayExpress:VIT_17s0000g07580 | EnsemblPlantsGene:VIT_17s0000g07580 | EnsemblPlants:VIT_17s0000g07580.t01 | RefSeq:XP_002283787 | RefSeq:XP_002283787.1 |
| RefSeq:XP_002283787.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:8563393..8566067
Molecular Weight (calculated)
28887.9 Da
IEP (calculated)
7.612
GRAVY (calculated)
-0.325
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSIAHNLH YKSLPLHSVP PPLYKYWKQI PRTFLVMGSA AGEFLRHVLP EKVGVSDHSA AGSELHVLAV DDSHVDRKVI ERLLKISSCK VTAVESGTRA
101: LQFLGLDGEE NSVGFDGLKV NLIMTDYSMP GMTGYELLKK IKESKAFRKI PVVIMSSENI LTRIDRCLEE GAEEFIVKPV KLADVRRLRD FIMRGEEEGE
201: ENRKKGNHKR KLQDDYSISP PLSPAPSLDC EISSLLLPSS SSSSPECPSK RPRLWVED
101: LQFLGLDGEE NSVGFDGLKV NLIMTDYSMP GMTGYELLKK IKESKAFRKI PVVIMSSENI LTRIDRCLEE GAEEFIVKPV KLADVRRLRD FIMRGEEEGE
201: ENRKKGNHKR KLQDDYSISP PLSPAPSLDC EISSLLLPSS SSSSPECPSK RPRLWVED
001: MAEVLRPEML DISNDTSSLA SPKLLHVLAV DDSMVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDGEN NSSVGFEDLK INLIMTDYSM PGMTGYELLK
101: KIKESSAFRE IPVVIMSSEN ILPRIDRCLE EGAEDFLLKP VKLADVKRLR DSLMKAEERA FKNIMHKREL EANDIYSQLK RAKI
101: KIKESSAFRE IPVVIMSSEN ILPRIDRCLE EGAEDFLLKP VKLADVKRLR DSLMKAEERA FKNIMHKREL EANDIYSQLK RAKI
Arabidopsis Description
ARR5Response reactor 2 [Source:UniProtKB/TrEMBL;Acc:Q0WW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.