Factsheet for VIT_17s0000g06240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87249	Canola	cytosol	17.87	65.62
Bra035894.1-P	Field mustard	cytosol	17.02	64.52
CDY16774	Canola	cytosol	17.02	64.52
Bra029260.1-P	Field mustard	nucleus	49.79	60.94
CDY00287	Canola	nucleus	52.34	60.59
CDY67519	Canola	nucleus	50.21	60.51
Bra010083.1-P	Field mustard	nucleus	51.49	59.61
CDY65200	Canola	nucleus	51.49	59.61
AT5G62440.1	Thale cress	nucleus	48.51	56.44
PGSC0003DMT400083079	Potato	cytosol	54.04	56.19
PGSC0003DMT400050280	Potato	nucleus	48.09	55.12
KRH56910	Soybean	cytosol	47.23	53.88
Solyc06g069770.2.1	Tomato	cytosol, plastid	51.49	53.3
Solyc03g116020.2.1	Tomato	nucleus	45.96	52.43
GSMUA_Achr8P16910_001	Banana	cytosol	43.83	51.24
KRH03479	Soybean	cytosol	45.11	50.96
GSMUA_Achr5P23750_001	Banana	cytosol	48.51	50.44
KRH54559	Soybean	cytosol	53.19	49.6
Os03t0187000-01	Rice	nucleus	46.38	46.98
Zm00001d048238_P001	Maize	extracellular	46.38	46.38
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	51.06	46.15
GSMUA_Achr6P03330_001	Banana	cytosol	41.7	43.36
TraesCS4A01G002200.1	Wheat	nucleus	41.7	43.17
TraesCS4D01G301400.1	Wheat	nucleus	41.7	42.79
HORVU4Hr1G078020.1	Barley	nucleus	41.28	42.54
TraesCS4B01G302900.1	Wheat	nucleus	41.28	42.54
EER95366	Sorghum	nucleus	43.4	41.63
Zm00001d027967_P001	Maize	nucleus	40.85	36.78

Protein Annotations

EntrezGene:100255290	wikigene:100255290	Gene3D:3.10.450.40	MapMan:35.1	EMBL:AM471913	ProteinID:CAN70579
ProteinID:CAN70579.1	ProteinID:CCB43086	ProteinID:CCB43086.1	ncoils:Coil	UniProt:F6GT77	EMBL:FN594950
EntrezGene:LOC100255290	wikigene:LOC100255290	PFAM:PF11523	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3	TIGR:TC68452
UniParc:UPI00015C8C3D	ArrayExpress:VIT_17s0000g06240	EnsemblPlantsGene:VIT_17s0000g06240	EnsemblPlants:VIT_17s0000g06240.t01	unigene:Vvi.17072	RefSeq:XP_002284935
RefSeq:XP_002284935.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:6795578..6797695

Molecular Weight (calculated)

25735.9 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.897

Length

235 amino acids

Sequence
(BLAST)

001: MAETVVSETP ETVTERETAN TQDMDVEAPE PSQPNGSDSA DNVTNGDSNS KRGREEAGEG EDANDAVTKK QKVEKSVEEE RLEKLEAEVV ETGRFSLGPK
101: TFGSSVEMFD HFFKFLHYWP ANLDVNKYEH MMLLDLLKKG HTEPDKKIGG GIHAFQVRYH PVFKSRCFFV IRDDESVDDF SFRKCVDHIS PLPENMKAKS
201: EVNKALGGGR GGKGGGGGGR GGGRGRGGRG GRGRN

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.