CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	KRH03376	AT3G48100.1	18642946
AT5G62440.1	KRH54462	AT3G48100.1	18642946
AT5G62440.1	KRH57009	AT3G48100.1	18642946
AT5G62440.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54559	Soybean	cytosol	73.08	75.4
Bra035894.1-P	Field mustard	cytosol	14.62	61.29
CDY16774	Canola	cytosol	14.62	61.29
KRH56910	Soybean	cytosol	45.38	57.28
CDX87249	Canola	cytosol	13.85	56.25
KRH03479	Soybean	cytosol	44.23	55.29
CDY67519	Canola	nucleus	40.38	53.85
Bra029260.1-P	Field mustard	nucleus	39.62	53.65
Bra010083.1-P	Field mustard	nucleus	40.38	51.72
VIT_17s0000g06240.t01	Wine grape	nucleus	46.15	51.06
AT5G62440.1	Thale cress	nucleus	39.62	50.99
CDY65200	Canola	nucleus	39.62	50.74
CDY00287	Canola	nucleus	39.62	50.74
PGSC0003DMT400083079	Potato	cytosol	42.69	49.12
Solyc06g069770.2.1	Tomato	cytosol, plastid	42.31	48.46
PGSC0003DMT400050280	Potato	nucleus	37.31	47.32
Solyc03g116020.2.1	Tomato	nucleus	37.31	47.09
Zm00001d048238_P001	Maize	extracellular	37.69	41.7
GSMUA_Achr5P23750_001	Banana	cytosol	35.77	41.15
GSMUA_Achr8P16910_001	Banana	cytosol	31.15	40.3
Os03t0187000-01	Rice	nucleus	35.77	40.09
GSMUA_Achr6P03330_001	Banana	cytosol	33.85	38.94
TraesCS4A01G002200.1	Wheat	nucleus	33.85	38.77
HORVU4Hr1G078020.1	Barley	nucleus	33.46	38.16
TraesCS4B01G302900.1	Wheat	nucleus	33.46	38.16
TraesCS4D01G301400.1	Wheat	nucleus	33.08	37.55
EER95366	Sorghum	nucleus	33.85	35.92
Zm00001d027967_P001	Maize	nucleus	34.62	34.48

Protein Annotations

EMBL:ACUP02002665	EnsemblPlants:KRH63336	EnsemblPlantsGene:GLYMA_04G169200	EntrezGene:100804514	Gene3D:3.10.450.40	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3	PFAM:PF11523
ProteinID:KRH63336	ProteinID:KRH63336.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0006EDD521	UniProt:A0A0R0KFI6
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:42358456..42360357

Molecular Weight (calculated)

29286.3 Da

IEP (calculated)

4.680

GRAVY (calculated)

-0.704

Length

260 amino acids

Sequence
(BLAST)

001: MAEEAALEVV DPNTAAAAAA VDMDVENVEA GGNGAEPNQK RAREEEEPQG GDDDVSKKQR VDEENEKSVE EQRLEKRDEQ EEEKGEEKEA EKEEEEEKEA
101: SGSVNLGFKS FGSSLEMFHY FYNFLHTWPQ YLNVNKYEHL MLLELLKNGH AEPDKKIGGG VRAFQVRKHP TFKSRCFFLI REDDSADDFS FRKCVDHILP
201: LPEEMHLKSD ANKALGGGGG KHYGGGKVEK LNIIVAAGLS FILISKMFFV YLPRIFHVSC

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.