CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	KRH03376	AT3G48100.1	18642946
AT5G62440.1	KRH54462	AT3G48100.1	18642946
AT5G62440.1	KRH57009	AT3G48100.1	18642946
AT5G62440.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03479	Soybean	cytosol	81.07	80.29
Bra035894.1-P	Field mustard	cytosol	18.93	62.9
CDY16774	Canola	cytosol	18.93	62.9
CDX87249	Canola	cytosol	18.45	59.38
Bra029260.1-P	Field mustard	nucleus	51.46	55.21
CDY67519	Canola	nucleus	51.46	54.36
CDY65200	Canola	nucleus	52.43	53.2
AT5G62440.1	Thale cress	nucleus	51.94	52.97
Bra010083.1-P	Field mustard	nucleus	51.46	52.22
CDY00287	Canola	nucleus	50.97	51.72
KRH54559	Soybean	cytosol	60.68	49.6
Solyc03g116020.2.1	Tomato	nucleus	48.54	48.54
PGSC0003DMT400050280	Potato	nucleus	48.06	48.29
PGSC0003DMT400083079	Potato	cytosol	51.94	47.35
VIT_17s0000g06240.t01	Wine grape	nucleus	53.88	47.23
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	57.28	45.38
Solyc06g069770.2.1	Tomato	cytosol, plastid	49.51	44.93
GSMUA_Achr5P23750_001	Banana	cytosol	47.57	43.36
GSMUA_Achr8P16910_001	Banana	cytosol	42.23	43.28
GSMUA_Achr6P03330_001	Banana	cytosol	43.69	39.82
Os03t0187000-01	Rice	nucleus	44.66	39.66
Zm00001d048238_P001	Maize	extracellular	44.17	38.72
HORVU4Hr1G078020.1	Barley	nucleus	40.78	36.84
TraesCS4B01G302900.1	Wheat	nucleus	40.29	36.4
TraesCS4A01G002200.1	Wheat	nucleus	39.81	36.12
TraesCS4D01G301400.1	Wheat	nucleus	39.81	35.81
EER95366	Sorghum	nucleus	40.78	34.29
Zm00001d027967_P001	Maize	nucleus	39.81	31.42

Protein Annotations

EMBL:ACUP02002800	EnsemblPlants:KRH56910	EnsemblPlantsGene:GLYMA_05G026600	Gene3D:3.10.450.40	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3
PFAM:PF11523	ProteinID:KRH56910	ProteinID:KRH56910.1	SEG:seg	UniParc:UPI00023BF2A3	UniProt:I1JZP3
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:2294606..2296285

Molecular Weight (calculated)

22812.0 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.698

Length

206 amino acids

Sequence
(BLAST)

001: MTMAEATASE LEIVEPTTTD AAAADVAVDG VESNLKRTRE DSDDEEDGVS KKQKVDAEEK KASGPVKLGF KSFASSVEMF DYFYNLLHAW PAYLNLNQYE
101: HMMLLELLKN GHTEPDTKIG GGIRVFQVRK HPMWKSRCFF LVRDDESVDD FSFRKCVDHI LPLPQEMQVR PDANRALGGA KKHHRGKGGG GGRGGHGHGK
201: KGGSKH

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.