Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62440.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116020.2.1 | Tomato | nucleus | 89.76 | 89.32 |
| PGSC0003DMT400083079 | Potato | cytosol | 66.83 | 60.62 |
| Bra035894.1-P | Field mustard | cytosol | 18.05 | 59.68 |
| CDY16774 | Canola | cytosol | 18.05 | 59.68 |
| CDX87249 | Canola | cytosol | 18.54 | 59.38 |
| AT5G62440.1 | Thale cress | nucleus | 54.63 | 55.45 |
| Bra029260.1-P | Field mustard | nucleus | 51.71 | 55.21 |
| CDY67519 | Canola | nucleus | 51.71 | 54.36 |
| CDY65200 | Canola | nucleus | 52.2 | 52.71 |
| CDY00287 | Canola | nucleus | 50.73 | 51.23 |
| Bra010083.1-P | Field mustard | nucleus | 50.24 | 50.74 |
| VIT_17s0000g06240.t01 | Wine grape | nucleus | 55.12 | 48.09 |
| KRH56910 | Soybean | cytosol | 48.29 | 48.06 |
| GSMUA_Achr8P16910_001 | Banana | cytosol | 46.83 | 47.76 |
| KRH03479 | Soybean | cytosol | 47.8 | 47.12 |
| KRH54559 | Soybean | cytosol | 52.68 | 42.86 |
| GSMUA_Achr5P23750_001 | Banana | cytosol | 45.85 | 41.59 |
| Os03t0187000-01 | Rice | nucleus | 46.83 | 41.38 |
| GSMUA_Achr6P03330_001 | Banana | cytosol | 45.37 | 41.15 |
| Zm00001d048238_P001 | Maize | extracellular | 46.34 | 40.43 |
| TraesCS4D01G301400.1 | Wheat | nucleus | 44.39 | 39.74 |
| TraesCS4B01G302900.1 | Wheat | nucleus | 43.9 | 39.47 |
| TraesCS4A01G002200.1 | Wheat | nucleus | 42.93 | 38.77 |
| HORVU4Hr1G078020.1 | Barley | nucleus | 42.44 | 38.16 |
| KRH63336 | Soybean | cytosol, endoplasmic reticulum, nucleus | 47.32 | 37.31 |
| EER95366 | Sorghum | nucleus | 43.9 | 36.73 |
| Zm00001d027967_P001 | Maize | nucleus | 42.93 | 33.72 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050280 | EnsemblPlantsGene:PGSC0003DMG400019531 | EntrezGene:102599571 | Gene3D:3.10.450.40 | PANTHER:PTHR33415 | PANTHER:PTHR33415:SF3 |
| PFAM:PF11523 | PGSC:PGSC0003DMG400019531 | RefSeq:XP_006364595.1 | SEG:seg | UniParc:UPI000296984E | UniProt:M1BQ24 |
| MapMan:35.1 | : | : | : | : | : |
Description
EMB514 [Source:PGSC_GENE;Acc:PGSC0003DMG400019531]
Coordinates
chr3:-:55819907..55821627
Molecular Weight (calculated)
23095.0 Da
IEP (calculated)
6.175
GRAVY (calculated)
-0.890
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETESVTNE ALGMAEKEET SVQKMDVEVP AVDDANGGSK RPREEGDKLE DEENGDDTKK PRVDQSVEEE KKDVSVPVSV GSKSFVSSVE MFDYFYKLLH
101: SWSVNLNLNK YEHMVLLDLL KKGHSEPERK IGTGVGAFQI RFHPHFKSRC FFVVREDDTV DDFSFRKCVD QIQPLPENMQ TKHHANGGKG GGRGRGRGRG
201: GRSRY
101: SWSVNLNLNK YEHMVLLDLL KKGHSEPERK IGTGVGAFQI RFHPHFKSRC FFVVREDDTV DDFSFRKCVD QIQPLPENMQ TKHHANGGKG GGRGRGRGRG
201: GRSRY
001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
Arabidopsis Description
EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.