Factsheet for Os03t0187000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G002200.1	Wheat	nucleus	69.4	70.93
TraesCS4B01G302900.1	Wheat	nucleus	68.97	70.18
HORVU4Hr1G078020.1	Barley	nucleus	68.1	69.3
TraesCS4D01G301400.1	Wheat	nucleus	68.1	69.0
Zm00001d048238_P001	Maize	extracellular	63.79	62.98
Bra035894.1-P	Field mustard	cytosol	16.38	61.29
CDY16774	Canola	cytosol	16.38	61.29
CDX87249	Canola	cytosol	16.81	60.94
EER95366	Sorghum	nucleus	63.79	60.41
Bra029260.1-P	Field mustard	nucleus	45.69	55.21
CDY67519	Canola	nucleus	46.12	54.87
AT5G62440.1	Thale cress	nucleus	45.69	52.48
CDY65200	Canola	nucleus	43.97	50.25
Zm00001d027967_P001	Maize	nucleus	56.47	50.19
Bra010083.1-P	Field mustard	nucleus	43.53	49.75
CDY00287	Canola	nucleus	43.53	49.75
GSMUA_Achr8P16910_001	Banana	cytosol	41.81	48.26
PGSC0003DMT400050280	Potato	nucleus	41.38	46.83
PGSC0003DMT400083079	Potato	cytosol	45.26	46.46
VIT_17s0000g06240.t01	Wine grape	nucleus	46.98	46.38
Solyc03g116020.2.1	Tomato	nucleus	40.95	46.12
GSMUA_Achr5P23750_001	Banana	cytosol	44.83	46.02
KRH56910	Soybean	cytosol	39.66	44.66
GSMUA_Achr6P03330_001	Banana	cytosol	42.67	43.81
Solyc06g069770.2.1	Tomato	cytosol, plastid	42.67	43.61
KRH03479	Soybean	cytosol	37.93	42.31
KRH54559	Soybean	cytosol	45.69	42.06
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	40.09	35.77

Protein Annotations

EMBL:AK059827	EnsemblPlants:Os03t0187000-01	EnsemblPlantsGene:Os03g0187000	EntrezGene:4331875	Gene3D:3.10.450.40	ncoils:Coil
PANTHER:PTHR33415	PANTHER:PTHR33415:SF3	PFAM:PF11523	ProteinID:ABF94366.1	ProteinID:BAF11120.1	ProteinID:BAS82683.1
ProteinID:EEE58461.1	RefSeq:XP_015632335.1	SEG:seg	UniParc:UPI0000DB4C70	UniProt:Q10QR1	MapMan:35.1

Description

Similar to EMB514. (Os03t0187000-01)

Coordinates

chr3:+:4545306..4547966

Molecular Weight (calculated)

24623.6 Da

IEP (calculated)

5.163

GRAVY (calculated)

-0.809

Length

232 amino acids

Sequence
(BLAST)

001: MAEPEVVVAA GGEAMEAEAA EPAAANPSQK REREEGDDSA AGAAGEEAAE GAAAKKQKVE GEGEAKGAED EAKGEEEEGA KEEEAKPVKL GPKEFATGVE
101: MFDYFFALLH SWAPQLEINK YEHMVLEDLL KKGHAESDRK IGAGIEAFEI RNHPVFQSRC FFVRRVDGSS DDFSFRKCVD SILPLPEDMK IGNKSNGKKG
201: GGHFKGGGGR GGGRGGGRGG GRGFRGRGRR GN

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.