Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018084.1-P | |
| Bra019524.1-P | |
| Bra033773.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62440.1 | Bra018084.1-P | AT3G48100.1 | 18642946 |
| AT5G62440.1 | Bra019524.1-P | AT3G48100.1 | 18642946 |
| AT5G62440.1 | Bra033773.1-P | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67519 | Canola | nucleus | 99.48 | 97.95 |
| Bra035894.1-P | Field mustard | cytosol | 27.6 | 85.48 |
| AT5G62440.1 | Thale cress | nucleus | 82.29 | 78.22 |
| Bra010083.1-P | Field mustard | nucleus | 81.25 | 76.85 |
| PGSC0003DMT400050280 | Potato | nucleus | 55.21 | 51.71 |
| KRH56910 | Soybean | cytosol | 55.21 | 51.46 |
| Solyc03g116020.2.1 | Tomato | nucleus | 54.69 | 50.97 |
| VIT_17s0000g06240.t01 | Wine grape | nucleus | 60.94 | 49.79 |
| KRH03479 | Soybean | cytosol | 52.6 | 48.56 |
| GSMUA_Achr5P23750_001 | Banana | cytosol | 56.77 | 48.23 |
| GSMUA_Achr8P16910_001 | Banana | cytosol | 49.48 | 47.26 |
| PGSC0003DMT400083079 | Potato | cytosol | 54.17 | 46.02 |
| Os03t0187000-01 | Rice | nucleus | 55.21 | 45.69 |
| KRH54559 | Soybean | cytosol | 59.38 | 45.24 |
| Solyc06g069770.2.1 | Tomato | cytosol, plastid | 52.6 | 44.49 |
| TraesCS4A01G002200.1 | Wheat | nucleus | 52.08 | 44.05 |
| GSMUA_Achr6P03330_001 | Banana | cytosol | 51.56 | 43.81 |
| TraesCS4B01G302900.1 | Wheat | nucleus | 51.04 | 42.98 |
| TraesCS4D01G301400.1 | Wheat | nucleus | 50.52 | 42.36 |
| HORVU4Hr1G078020.1 | Barley | nucleus | 50.0 | 42.11 |
| Zm00001d048238_P001 | Maize | extracellular | 50.52 | 41.28 |
| KRH63336 | Soybean | cytosol, endoplasmic reticulum, nucleus | 53.65 | 39.62 |
| EER95366 | Sorghum | nucleus | 48.96 | 38.37 |
| Zm00001d027967_P001 | Maize | nucleus | 46.88 | 34.48 |
Protein Annotations
| Gene3D:3.10.450.40 | MapMan:35.1 | EnsemblPlantsGene:Bra029260 | EnsemblPlants:Bra029260.1 | EnsemblPlants:Bra029260.1-P | GO:GO:0000003 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0017126 |
| GO:GO:0051302 | UniProt:M4EKE3 | PFAM:PF11523 | PANTHER:PTHR33415 | PANTHER:PTHR33415:SF3 | UniParc:UPI0002545D9C |
| SEG:seg | : | : | : | : | : |
Description
AT5G62440 (E=1e-058) | Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.
Coordinates
chrA02:-:26263126..26264359
Molecular Weight (calculated)
21442.3 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.922
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQEIVAS APAEPITDME VEAAEKRARE ETKETEDGGE SKKQKVEEEE KPNGSDPVKL GPKEFVTSVA MFDYFTKFMH FWPTDLDVNK YEHMVLLDLI
101: KKGHTEPDNK IGGGIKAFQV RTHPMWKSRC FFLVREDDTA DDFSYRKCVD HILPLPENMK TPGSNGNGHG GGGRGGGRRG GRGGGRGGRF RR
101: KKGHTEPDNK IGGGIKAFQV RTHPMWKSRC FFLVREDDTA DDFSYRKCVD HILPLPENMK TPGSNGNGHG GGGRGGGRRG GRGGGRGGRF RR
001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
Arabidopsis Description
EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.