CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	CDY21807	AT3G48100.1	18642946
AT5G62440.1	CDY36905	AT3G48100.1	18642946
AT5G62440.1	CDY54257	AT3G48100.1	18642946
AT5G62440.1	CDY59856	AT3G48100.1	18642946
AT5G62440.1	CDY68129	AT3G48100.1	18642946
AT5G62440.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029260.1-P	Field mustard	nucleus	97.95	99.48
CDY16774	Canola	cytosol	27.18	85.48
CDX87249	Canola	cytosol	27.69	84.38
AT5G62440.1	Thale cress	nucleus	81.54	78.71
CDY65200	Canola	nucleus	81.03	77.83
CDY00287	Canola	nucleus	80.51	77.34
PGSC0003DMT400050280	Potato	nucleus	54.36	51.71
KRH56910	Soybean	cytosol	54.36	51.46
Solyc03g116020.2.1	Tomato	nucleus	53.85	50.97
VIT_17s0000g06240.t01	Wine grape	nucleus	60.51	50.21
GSMUA_Achr5P23750_001	Banana	cytosol	56.41	48.67
KRH03479	Soybean	cytosol	51.79	48.56
GSMUA_Achr8P16910_001	Banana	cytosol	49.23	47.76
Os03t0187000-01	Rice	nucleus	54.87	46.12
KRH54559	Soybean	cytosol	59.49	46.03
PGSC0003DMT400083079	Potato	cytosol	53.33	46.02
TraesCS4A01G002200.1	Wheat	nucleus	52.31	44.93
Solyc06g069770.2.1	Tomato	cytosol, plastid	51.79	44.49
GSMUA_Achr6P03330_001	Banana	cytosol	51.28	44.25
TraesCS4B01G302900.1	Wheat	nucleus	51.28	43.86
TraesCS4D01G301400.1	Wheat	nucleus	50.77	43.23
HORVU4Hr1G078020.1	Barley	nucleus	50.26	42.98
Zm00001d048238_P001	Maize	extracellular	50.26	41.7
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	53.85	40.38
EER95366	Sorghum	nucleus	49.23	39.18
Zm00001d027967_P001	Maize	nucleus	46.15	34.48

Protein Annotations

Gene3D:3.10.450.40	MapMan:35.1	UniProt:A0A078JL49	EnsemblPlants:CDY67519	ProteinID:CDY67519	ProteinID:CDY67519.1
ncoils:Coil	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0016043	GO:GO:0017126	GO:GO:0051302	EnsemblPlantsGene:GSBRNA2T00064349001	PFAM:PF11523	PANTHER:PTHR33415
PANTHER:PTHR33415:SF3	UniParc:UPI0004EDE247	SEG:seg	:	:	:

Description

BnaAnng24490DBnaAnng24490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JL49]

Coordinates

chrLK036201:-:5156..6565

Molecular Weight (calculated)

21830.6 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.959

Length

195 amino acids

Sequence
(BLAST)

001: MAEQQEIVAS APAEPITDME VEAAEKRARE ETEETEDGGE SKKQKVEEEE EEEKPNGSDP VKLGPKEFVT SVAMFDYFTK FMHFWPTDLD VNKYEHMVLL
101: DLIKKGHTEP DNKIGGGIKA FQVRTHPMWK SRCFFLVRED DTADDFSYRK CVDHILPLPE NMKTPGSNGN GHGGGGRGGG RRGGRGGGRG GRFRR

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.