CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	KRH03376	AT3G48100.1	18642946
AT5G62440.1	KRH54462	AT3G48100.1	18642946
AT5G62440.1	KRH57009	AT3G48100.1	18642946
AT5G62440.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56910	Soybean	cytosol	80.29	81.07
Bra035894.1-P	Field mustard	cytosol	17.31	58.06
CDY16774	Canola	cytosol	17.31	58.06
CDX87249	Canola	cytosol	17.79	57.81
Bra029260.1-P	Field mustard	nucleus	48.56	52.6
CDY67519	Canola	nucleus	48.56	51.79
AT5G62440.1	Thale cress	nucleus	49.04	50.49
CDY65200	Canola	nucleus	47.12	48.28
PGSC0003DMT400050280	Potato	nucleus	47.12	47.8
CDY00287	Canola	nucleus	46.63	47.78
KRH54559	Soybean	cytosol	57.69	47.62
Bra010083.1-P	Field mustard	nucleus	46.15	47.29
Solyc03g116020.2.1	Tomato	nucleus	46.15	46.6
PGSC0003DMT400083079	Potato	cytosol	49.04	45.13
VIT_17s0000g06240.t01	Wine grape	nucleus	50.96	45.11
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	55.29	44.23
Solyc06g069770.2.1	Tomato	cytosol, plastid	45.67	41.85
GSMUA_Achr5P23750_001	Banana	cytosol	44.71	41.15
GSMUA_Achr8P16910_001	Banana	cytosol	39.42	40.8
GSMUA_Achr6P03330_001	Banana	cytosol	41.35	38.05
Os03t0187000-01	Rice	nucleus	42.31	37.93
Zm00001d048238_P001	Maize	extracellular	42.31	37.45
TraesCS4A01G002200.1	Wheat	nucleus	38.94	35.68
HORVU4Hr1G078020.1	Barley	nucleus	38.94	35.53
TraesCS4B01G302900.1	Wheat	nucleus	38.94	35.53
TraesCS4D01G301400.1	Wheat	nucleus	38.46	34.93
EER95366	Sorghum	nucleus	38.94	33.06
Zm00001d027967_P001	Maize	nucleus	38.94	31.03

Protein Annotations

EMBL:ACUP02010348	EnsemblPlants:KRH03479	EnsemblPlantsGene:GLYMA_17G100300	EntrezGene:100810172	Gene3D:3.10.450.40	PANTHER:PTHR33415
PANTHER:PTHR33415:SF3	PFAM:PF11523	ProteinID:KRH03479	ProteinID:KRH03479.1	SEG:seg	UniParc:UPI000233EADE
UniProt:I1MTT8	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:7907773..7909350

Molecular Weight (calculated)

23202.5 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.629

Length

208 amino acids

Sequence
(BLAST)

001: MAEATASEPE IVEPTTMAAA DTAFDGVDSN QKRTRVDSDD EEDGVSKKRK VDEEEKEPSG PVKLGFKSFA SSLEMFDYFY NLLHAWPPFQ NLNQYEHMML
101: LELLKNGHTE PDTKIGGGIC VFQVRKHPMW KSRCFFLVRE GESVDDFSFH KCVDHILPLP EEMQVKPDAN MALGGGKKHY RGKSGGGGTS GHGHGKKGGS
201: KHFMCFMI

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.