Factsheet for Zm00001d048238_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G302900.1	Wheat	nucleus	62.55	64.47
TraesCS4A01G002200.1	Wheat	nucleus	62.13	64.32
Os03t0187000-01	Rice	nucleus	62.98	63.79
HORVU4Hr1G078020.1	Barley	nucleus	61.28	63.16
TraesCS4D01G301400.1	Wheat	nucleus	61.28	62.88
Bra035894.1-P	Field mustard	cytosol	16.17	61.29
CDY16774	Canola	cytosol	16.17	61.29
CDX87249	Canola	cytosol	16.6	60.94
Zm00001d027967_P001	Maize	nucleus	64.26	57.85
CDY65200	Canola	nucleus	44.68	51.72
CDY00287	Canola	nucleus	43.83	50.74
Bra029260.1-P	Field mustard	nucleus	41.28	50.52
CDY67519	Canola	nucleus	41.7	50.26
Bra010083.1-P	Field mustard	nucleus	43.4	50.25
AT5G62440.1	Thale cress	nucleus	42.98	50.0
VIT_17s0000g06240.t01	Wine grape	nucleus	46.38	46.38
PGSC0003DMT400050280	Potato	nucleus	40.43	46.34
Solyc06g069770.2.1	Tomato	cytosol, plastid	43.83	45.37
Solyc03g116020.2.1	Tomato	nucleus	39.57	45.15
PGSC0003DMT400083079	Potato	cytosol	43.4	45.13
GSMUA_Achr8P16910_001	Banana	cytosol	38.3	44.78
KRH56910	Soybean	cytosol	38.72	44.17
GSMUA_Achr5P23750_001	Banana	cytosol	42.13	43.81
KRH03479	Soybean	cytosol	37.45	42.31
GSMUA_Achr6P03330_001	Banana	cytosol	39.57	41.15
KRH54559	Soybean	cytosol	43.83	40.87
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	41.7	37.69

Protein Annotations

EMBL:BT070115	EMBL:EU970887	EMBL:EU970979	EMBL:EU971890	EnsemblPlants:Zm00001d048238_P001	EnsemblPlants:Zm00001d048238_T001
EnsemblPlantsGene:Zm00001d048238	EntrezGene:100277882	Gene3D:3.10.450.40	ncoils:Coil	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3
PFAM:PF11523	ProteinID:AQL09184.1	SEG:seg	UniParc:UPI000182EDA3	UniProt:B6U0X2	MapMan:35.1

Description

EMB514

Coordinates

chr9:-:153030771..153033216

Molecular Weight (calculated)

25465.6 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.900

Length

235 amino acids

Sequence
(BLAST)

001: MAEPEVGVAA DTAMETEAPE AAGQKRERDE VGDPAAEGGE AAVEEAAAAK KPKLEEETKE VEEASEEKAE ETAEGKTEEA NEKTVEAERK PVKLGPKEFS
101: SSVEMFDYFF GLLHYWTPQI EFNKYEQMVL EDLLKKGHAE PAKKIGAGVE AFEIRNHPVW QSRCFFIRRI DGSSDDFSFR KCVDNILPLP EDMKVGNGKK
201: SGGHHKGGGG GGGGRGGGRG RGGWRGGRGR GRRGG

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.