Factsheet for Zm00001d027967_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95366	Sorghum	nucleus	62.84	66.94
Zm00001d048238_P001	Maize	extracellular	57.85	64.26
TraesCS4A01G002200.1	Wheat	nucleus	52.11	59.91
TraesCS4B01G302900.1	Wheat	nucleus	51.72	59.21
HORVU4Hr1G078020.1	Barley	nucleus	51.34	58.77
TraesCS4D01G301400.1	Wheat	nucleus	50.96	58.08
CDX87249	Canola	cytosol	14.18	57.81
Os03t0187000-01	Rice	nucleus	50.19	56.47
Bra035894.1-P	Field mustard	cytosol	13.41	56.45
CDY16774	Canola	cytosol	13.41	56.45
CDY00287	Canola	nucleus	37.16	47.78
CDY65200	Canola	nucleus	37.16	47.78
Bra010083.1-P	Field mustard	nucleus	36.78	47.29
Bra029260.1-P	Field mustard	nucleus	34.48	46.88
CDY67519	Canola	nucleus	34.48	46.15
AT5G62440.1	Thale cress	nucleus	34.87	45.05
PGSC0003DMT400083079	Potato	cytosol	37.93	43.81
Solyc06g069770.2.1	Tomato	cytosol, plastid	37.93	43.61
PGSC0003DMT400050280	Potato	nucleus	33.72	42.93
GSMUA_Achr8P16910_001	Banana	cytosol	32.57	42.29
Solyc03g116020.2.1	Tomato	nucleus	32.95	41.75
GSMUA_Achr5P23750_001	Banana	cytosol	35.63	41.15
VIT_17s0000g06240.t01	Wine grape	nucleus	36.78	40.85
KRH56910	Soybean	cytosol	31.42	39.81
GSMUA_Achr6P03330_001	Banana	cytosol	34.1	39.38
KRH03479	Soybean	cytosol	31.03	38.94
KRH54559	Soybean	cytosol	37.16	38.49
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	34.48	34.62

Protein Annotations

EnsemblPlants:Zm00001d027967_P001	EnsemblPlants:Zm00001d027967_T001	EnsemblPlantsGene:Zm00001d027967	Gene3D:3.10.450.40	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3
PFAM:PF11523	ProteinID:ONL94395.1	SEG:seg	UniParc:UPI00084546C8	UniProt:A0A1D6JR12	MapMan:35.1

Description

EMB514

Coordinates

chr1:+:18522679..18525819

Molecular Weight (calculated)

28180.8 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.940

Length

261 amino acids

Sequence
(BLAST)

001: MAEPEMEVAV ATAAPAGQKR EREEGGDPAA ECGGEETEVE GAAAKKPKLE EAKEAEKGRV EETAEGKTQE ANEEKAVEAE DKPVTEEANE KKAVEAEGKP
101: VTQEANEEKA AEAEGKPVKL GPKEFASAID MFNYFYALLH SWTPQLEFNK YEQMVLEDLL RKGHAEPAKK IGAGVEAFEI GNHPVWKSHC FFVRRTDGSV
201: DDFSFRKCVD NILPLPEDFK IGNGKKSGGH QKDGGGGRAG GRRGGGRGGW RGGRGRGRRG G

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.