Factsheet for Solyc06g069770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62440.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083079	Potato	cytosol	84.58	84.96
Solyc03g116020.2.1	Tomato	nucleus	57.27	63.11
Bra035894.1-P	Field mustard	cytosol	16.74	61.29
CDY16774	Canola	cytosol	16.74	61.29
CDX87249	Canola	cytosol	15.86	56.25
Bra029260.1-P	Field mustard	nucleus	44.49	52.6
CDY65200	Canola	nucleus	46.7	52.22
CDY67519	Canola	nucleus	44.49	51.79
Bra010083.1-P	Field mustard	nucleus	46.26	51.72
CDY00287	Canola	nucleus	46.26	51.72
VIT_17s0000g06240.t01	Wine grape	nucleus	53.3	51.49
AT5G62440.1	Thale cress	nucleus	44.49	50.0
KRH56910	Soybean	cytosol	44.93	49.51
KRH54559	Soybean	cytosol	51.98	46.83
KRH03479	Soybean	cytosol	41.85	45.67
GSMUA_Achr5P23750_001	Banana	cytosol	44.49	44.69
Zm00001d048238_P001	Maize	extracellular	45.37	43.83
GSMUA_Achr8P16910_001	Banana	cytosol	38.77	43.78
Os03t0187000-01	Rice	nucleus	43.61	42.67
KRH63336	Soybean	cytosol, endoplasmic reticulum, nucleus	48.46	42.31
TraesCS4A01G002200.1	Wheat	nucleus	41.41	41.41
TraesCS4D01G301400.1	Wheat	nucleus	41.41	41.05
EER95366	Sorghum	nucleus	44.05	40.82
TraesCS4B01G302900.1	Wheat	nucleus	40.97	40.79
GSMUA_Achr6P03330_001	Banana	cytosol	40.53	40.71
HORVU4Hr1G078020.1	Barley	nucleus	39.21	39.04
Zm00001d027967_P001	Maize	nucleus	43.61	37.93

Protein Annotations

EnsemblPlants:Solyc06g069770.2.1	EnsemblPlantsGene:Solyc06g069770.2	Gene3D:3.10.450.40	PANTHER:PTHR33415	PANTHER:PTHR33415:SF3	PFAM:PF11523
SEG:seg	UniParc:UPI0002766D27	UniProt:K4C8E9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:-:43450018..43452431

Molecular Weight (calculated)

25592.8 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.886

Length

227 amino acids

Sequence
(BLAST)

001: MAETEPEVAA AVPAVEAVVE AEKEDTSAQD MDVEAQAADD TEENGGSKRP REEENEVEKE DATKKLKVDK SVEEERFENL DGSKTVDEEK KDVSGPISVG
101: PKNFGSSVEV FNYFYKLLHS WSPNLNLNKY EYIVLLDLLK KGHLEPDRKI GTGVRAFQIR FHPQYKSRCF FIIREDDSVD DFSFRKCIDH ISPLPENMQV
201: KHEANRDLAR GGKGGGRGRG RGGKPRY

Best Arabidopsis Sequence Match ( AT5G62440.1 )
(BLAST)

001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR

Arabidopsis Description

EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.