Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G302900.1 | Wheat | nucleus | 95.15 | 94.74 |
| TraesCS4D01G301400.1 | Wheat | nucleus | 94.71 | 93.89 |
| HORVU4Hr1G078020.1 | Barley | nucleus | 92.07 | 91.67 |
| Os03t0187000-01 | Rice | nucleus | 70.93 | 69.4 |
| Bra035894.1-P | Field mustard | cytosol | 17.18 | 62.9 |
| CDY16774 | Canola | cytosol | 17.18 | 62.9 |
| Zm00001d048238_P001 | Maize | extracellular | 64.32 | 62.13 |
| CDX87249 | Canola | cytosol | 16.74 | 59.38 |
| EER95366 | Sorghum | nucleus | 62.56 | 57.96 |
| CDY67519 | Canola | nucleus | 44.93 | 52.31 |
| Zm00001d027967_P001 | Maize | nucleus | 59.91 | 52.11 |
| Bra029260.1-P | Field mustard | nucleus | 44.05 | 52.08 |
| AT5G62440.1 | Thale cress | nucleus | 45.81 | 51.49 |
| CDY65200 | Canola | nucleus | 44.49 | 49.75 |
| Bra010083.1-P | Field mustard | nucleus | 44.05 | 49.26 |
| CDY00287 | Canola | nucleus | 44.05 | 49.26 |
| GSMUA_Achr5P23750_001 | Banana | cytosol | 45.81 | 46.02 |
| GSMUA_Achr8P16910_001 | Banana | cytosol | 40.53 | 45.77 |
| PGSC0003DMT400083079 | Potato | cytosol | 43.17 | 43.36 |
| GSMUA_Achr6P03330_001 | Banana | cytosol | 43.17 | 43.36 |
| PGSC0003DMT400050280 | Potato | nucleus | 38.77 | 42.93 |
| Solyc03g116020.2.1 | Tomato | nucleus | 38.77 | 42.72 |
| VIT_17s0000g06240.t01 | Wine grape | nucleus | 43.17 | 41.7 |
| Solyc06g069770.2.1 | Tomato | cytosol, plastid | 41.41 | 41.41 |
| KRH56910 | Soybean | cytosol | 36.12 | 39.81 |
| KRH03479 | Soybean | cytosol | 35.68 | 38.94 |
| KRH54559 | Soybean | cytosol | 40.97 | 36.9 |
| KRH63336 | Soybean | cytosol, endoplasmic reticulum, nucleus | 38.77 | 33.85 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G002200.1 | EnsemblPlantsGene:TraesCS4A01G002200 | Gene3D:3.10.450.40 | ncoils:Coil | PANTHER:PTHR33415 | PANTHER:PTHR33415:SF3 |
| PFAM:PF11523 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:1908784..1911389
Molecular Weight (calculated)
24326.3 Da
IEP (calculated)
6.076
GRAVY (calculated)
-0.844
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPEVAAAA AAAMETEAPE ANPSLKRERE EGDDSGPVAA AEEAEEAPAK KAKVEEEAKK AEDVAGNGEE EGAKGEEGKP VKLGPKEFAT AVDMFDYFFA
101: LLHSWSPNLE FNKYEQMVLE DLVKKGHAEP AKKIGSGVEA FEIRNHPVWQ SRCFFIRRVD GSADDFSFRK CVDNILPLPE DLKAGNKNSN GKKGHHFKGN
201: GGRGGGRGGG RGGGGFRGGR GRGRRGN
101: LLHSWSPNLE FNKYEQMVLE DLVKKGHAEP AKKIGSGVEA FEIRNHPVWQ SRCFFIRRVD GSADDFSFRK CVDNILPLPE DLKAGNKNSN GKKGHHFKGN
201: GGRGGGRGGG RGGGGFRGGR GRGRRGN
001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
Arabidopsis Description
EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.