Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62440.1 | KRH03376 | AT3G48100.1 | 18642946 |
| AT5G62440.1 | KRH54462 | AT3G48100.1 | 18642946 |
| AT5G62440.1 | KRH57009 | AT3G48100.1 | 18642946 |
| AT5G62440.1 | KRH63457 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63336 | Soybean | cytosol, endoplasmic reticulum, nucleus | 75.4 | 73.08 |
| Bra035894.1-P | Field mustard | cytosol | 17.06 | 69.35 |
| CDY16774 | Canola | cytosol | 17.06 | 69.35 |
| CDX87249 | Canola | cytosol | 17.06 | 67.19 |
| KRH56910 | Soybean | cytosol | 49.6 | 60.68 |
| CDY67519 | Canola | nucleus | 46.03 | 59.49 |
| Bra029260.1-P | Field mustard | nucleus | 45.24 | 59.38 |
| KRH03479 | Soybean | cytosol | 47.62 | 57.69 |
| Bra010083.1-P | Field mustard | nucleus | 45.63 | 56.65 |
| CDY65200 | Canola | nucleus | 45.63 | 56.65 |
| CDY00287 | Canola | nucleus | 44.84 | 55.66 |
| AT5G62440.1 | Thale cress | nucleus | 44.44 | 55.45 |
| PGSC0003DMT400083079 | Potato | cytosol | 48.81 | 54.42 |
| VIT_17s0000g06240.t01 | Wine grape | nucleus | 49.6 | 53.19 |
| PGSC0003DMT400050280 | Potato | nucleus | 42.86 | 52.68 |
| Solyc06g069770.2.1 | Tomato | cytosol, plastid | 46.83 | 51.98 |
| Solyc03g116020.2.1 | Tomato | nucleus | 41.67 | 50.97 |
| Os03t0187000-01 | Rice | nucleus | 42.06 | 45.69 |
| GSMUA_Achr8P16910_001 | Banana | cytosol | 35.71 | 44.78 |
| Zm00001d048238_P001 | Maize | extracellular | 40.87 | 43.83 |
| GSMUA_Achr5P23750_001 | Banana | cytosol | 38.89 | 43.36 |
| GSMUA_Achr6P03330_001 | Banana | cytosol | 38.1 | 42.48 |
| HORVU4Hr1G078020.1 | Barley | nucleus | 38.1 | 42.11 |
| TraesCS4A01G002200.1 | Wheat | nucleus | 36.9 | 40.97 |
| EER95366 | Sorghum | nucleus | 39.68 | 40.82 |
| TraesCS4B01G302900.1 | Wheat | nucleus | 36.9 | 40.79 |
| TraesCS4D01G301400.1 | Wheat | nucleus | 36.51 | 40.17 |
| Zm00001d027967_P001 | Maize | nucleus | 38.49 | 37.16 |
Protein Annotations
| EMBL:ACUP02003541 | EnsemblPlants:KRH54559 | EnsemblPlantsGene:GLYMA_06G194200 | EntrezGene:100796421 | Gene3D:3.10.450.40 | ncoils:Coil |
| PANTHER:PTHR33415 | PANTHER:PTHR33415:SF3 | PFAM:PF11523 | ProteinID:KRH54559 | ProteinID:KRH54559.1 | SEG:seg |
| UniParc:UPI00023395C6 | UniProt:I1KCT7 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:17312689..17314391
Molecular Weight (calculated)
27797.4 Da
IEP (calculated)
5.832
GRAVY (calculated)
-0.937
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAAPKVV DPNTVVAAAA AAAVDMDVEN IEAGDNGAEP NQKRAREEEE PLGDDDDVLK KQKVAEEKEQ SVEEQRLEKR DEKEEKEAEK EEEEKEASGS
101: VNLGFKSFVS SSEMFHYFYN FLHTWPQYLN VNKYEHLMLL ELLKNGHAEP DKKIGGGVRA FQVRKHPTFK SRCFFLIRED DSADDFSFRK CVDHILPLPE
201: EMHLKFDANK ALGGGGGGGG KHYGGGKGGR GGRGGRGGGG RGGHGRGGKW RH
101: VNLGFKSFVS SSEMFHYFYN FLHTWPQYLN VNKYEHLMLL ELLKNGHAEP DKKIGGGVRA FQVRKHPTFK SRCFFLIRED DSADDFSFRK CVDHILPLPE
201: EMHLKFDANK ALGGGGGGGG KHYGGGKGGR GGRGGRGGGG RGGHGRGGKW RH
001: MAEEQEIVDS LSAEVNPDQK VDMEVETATP KAETGDEKRE REETEEEENG GESKKQKVGE EEKSGPVKLG PKEFVTSVAM FDYFVKFLHF WPTDLDVNKY
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
101: EHMVLLDLIK KGHSEPEKKI GGGIKTFQVR THPMWKSRCF FLVREDDTAD DFSFRKCVDQ ILPLPENMKT PGANGNGHGG GRGGGGGRRG GRGGGRGGRF
201: RR
Arabidopsis Description
EMB514Protein EMBRYO DEFECTIVE 514 [Source:UniProtKB/Swiss-Prot;Acc:Q8L557]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.