Factsheet for VIT_14s0030g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g03900.t01	Wine grape	cytosol	91.95	91.95
PGSC0003DMT400069575	Potato	cytosol	88.51	88.51
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	88.51	88.51
PGSC0003DMT400083968	Potato	cytosol	87.74	87.74
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	87.36	87.36
GSMUA_Achr3P30060_001	Banana	cytosol	86.97	86.97
VIT_05s0094g00620.t01	Wine grape	cytosol	35.63	86.92
Bra017669.1-P	Field mustard	cytosol	85.06	85.06
CDY45324	Canola	cytosol, extracellular	85.06	85.06
CDX72495	Canola	cytosol	85.06	85.06
AT4G34670.1	Thale cress	cytosol	85.06	84.73
GSMUA_Achr5P08700_001	Banana	cytosol	84.67	84.67
CDY50760	Canola	cytosol	84.67	84.35
CDY41904	Canola	cytosol	84.67	84.35
GSMUA_Achr6P24760_001	Banana	cytosol	83.91	84.23
Bra040409.1-P	Field mustard	cytosol	84.29	83.97
GSMUA_Achr1P22500_001	Banana	cytosol	83.91	83.91
CDX75453	Canola	cytosol	83.91	83.59
CDX69078	Canola	cytosol, extracellular	83.91	83.59
Bra040119.1-P	Field mustard	cytosol	83.52	83.52
CDX76296	Canola	cytosol	83.52	83.52
CDY40680	Canola	cytosol	83.52	83.21
AT3G04840.1	Thale cress	cytosol	83.52	83.21
Bra011551.1-P	Field mustard	cytosol	83.52	83.21
Bra001127.1-P	Field mustard	cytosol	83.52	83.21
CDX74165	Canola	cytosol	83.52	83.21
Bra034643.1-P	Field mustard	cytosol	83.14	83.14
Zm00001d048157_P001	Maize	cytosol	82.76	83.08
Zm00001d048159_P001	Maize	cytosol	82.76	83.08
KXG39941	Sorghum	cytosol	82.76	83.08
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	83.52	82.89
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	83.52	82.89
EER99659	Sorghum	cytosol	83.52	82.89
CDY17474	Canola	cytosol	77.78	82.86
OQU92889	Sorghum	cytosol	75.86	82.85
Os03t0200500-01	Rice	nucleus	83.14	82.82
Zm00001d028117_P002	Maize	cytosol	82.38	82.69
EER99658	Sorghum	cytosol	83.14	82.51
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	83.14	82.51
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	81.99	78.68
EER99660	Sorghum	cytosol	64.37	77.06
Zm00001d006766_P001	Maize	cytosol	37.93	76.74
HORVU4Hr1G070370.1	Barley	cytosol, plastid	83.14	75.09
HORVU1Hr1G032060.4	Barley	cytosol	81.61	73.7
CDY30019	Canola	plasma membrane	83.52	72.19
OQU90205	Sorghum	mitochondrion	77.01	70.03
GSMUA_Achr8P31000_001	Banana	cytosol	16.86	69.84
Zm00001d048158_P002	Maize	plastid	82.76	67.08
HORVU6Hr1G080910.1	Barley	cytosol	21.46	62.92
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
CDY52999	Canola	cytosol	19.16	55.56
Bra026324.1-P	Field mustard	cytosol	19.16	55.56
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	44.44	42.18

Protein Annotations

EntrezGene:100232969	wikigene:100232969	MapMan:17.1.3.1.4	ProteinID:AAX55706	ProteinID:AAX55706.1	EMBL:AY849388
ProteinID:CCB58093	ProteinID:CCB58093.1	UniProt:F6HTT2	EMBL:FN596249	GO:GO:0002181	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EntrezGene:LOC100232969	wikigene:LOC100232969
HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk
InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	TIGR:TC68194	UniParc:UPI0001984A26	ArrayExpress:VIT_14s0030g01810
EnsemblPlantsGene:VIT_14s0030g01810	EnsemblPlants:VIT_14s0030g01810.t01	unigene:Vvi.7235	RefSeq:XP_002277791	RefSeq:XP_002277791.1	SEG:seg

Description

40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:F6HTT2]

Coordinates

chr14:-:6684533..6687242

Molecular Weight (calculated)

29904.3 Da

IEP (calculated)

10.526

GRAVY (calculated)

-0.604

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPFAKKDWY DIKAPSIFSV RNVGKTLVSR TQGTKIASEG LKHRVFEISL ADLQNDEDHA YRKIRLRAED VQGKNVLTNF
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYTLRMFCI AFTKKRQNQN KKTSYAQSSQ IRQIRRKMRE IMTTQAASCD LKELVRKFIP EMIGREIEKA
201: TSSIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYSEDVG VKMERPAEET VAEVETEVVG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.