Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41904 | Canola | cytosol | 99.62 | 99.62 |
| CDY50760 | Canola | cytosol | 99.62 | 99.62 |
| Bra001127.1-P | Field mustard | cytosol | 95.42 | 95.42 |
| Bra040119.1-P | Field mustard | cytosol | 94.66 | 95.02 |
| Bra017669.1-P | Field mustard | cytosol | 93.51 | 93.87 |
| Bra011551.1-P | Field mustard | cytosol | 93.51 | 93.51 |
| Bra034643.1-P | Field mustard | cytosol | 92.75 | 93.1 |
| AT3G04840.1 | Thale cress | cytosol | 91.98 | 91.98 |
| KRG91350 | Soybean | nucleus | 86.26 | 86.59 |
| KRH35477 | Soybean | nucleus | 85.88 | 86.21 |
| KRH77835 | Soybean | nucleus | 85.5 | 85.82 |
| KRH27653 | Soybean | endoplasmic reticulum | 85.11 | 85.44 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 84.35 | 84.67 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 83.97 | 84.29 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 83.21 | 83.52 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 83.21 | 83.52 |
| PGSC0003DMT400069575 | Potato | cytosol | 83.21 | 83.52 |
| PGSC0003DMT400019867 | Potato | cytosol | 82.82 | 83.46 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 82.82 | 83.14 |
| Zm00001d048157_P001 | Maize | cytosol | 82.44 | 83.08 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 82.44 | 83.08 |
| Zm00001d048159_P001 | Maize | cytosol | 82.44 | 83.08 |
| EER99659 | Sorghum | cytosol | 83.21 | 82.89 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 82.44 | 82.76 |
| PGSC0003DMT400083968 | Potato | cytosol | 82.44 | 82.76 |
| Zm00001d028117_P002 | Maize | cytosol | 82.06 | 82.69 |
| KXG39941 | Sorghum | cytosol | 82.06 | 82.69 |
| EER99658 | Sorghum | cytosol | 82.82 | 82.51 |
| Os03t0200500-01 | Rice | nucleus | 82.06 | 82.06 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 81.3 | 81.92 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 81.68 | 81.37 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 80.92 | 81.23 |
| OQU92889 | Sorghum | cytosol | 74.05 | 81.17 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.3 | 80.99 |
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 81.3 | 80.99 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 82.44 | 79.41 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 31.68 | 77.57 |
| EER99660 | Sorghum | cytosol | 63.36 | 76.15 |
| Zm00001d006766_P001 | Maize | cytosol | 37.4 | 75.97 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 74.81 | 74.24 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 80.92 | 73.36 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 80.53 | 73.01 |
| Bra026324.1-P | Field mustard | cytosol | 24.81 | 72.22 |
| OQU90205 | Sorghum | mitochondrion | 74.43 | 67.94 |
| Zm00001d048158_P002 | Maize | plastid | 82.44 | 67.08 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 22.14 | 65.17 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 15.65 | 65.08 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 7.63 | 62.5 |
| KRH37543 | Soybean | cytosol | 45.42 | 55.35 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 43.13 | 41.09 |
Protein Annotations
| MapMan:17.1.3.1.4 | EnsemblPlantsGene:Bra040409 | EnsemblPlants:Bra040409.1 | EnsemblPlants:Bra040409.1-P | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | UniProt:M4FH31 | HAMAP:MF_03122 | PFAM:PF01015 |
| ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF12 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS |
| SMART:SM01397 | UniParc:UPI000253ECFD | SEG:seg | : | : | : |
Description
AT4G34670 (E=2e-120) | 40S ribosomal protein S3A (RPS3aB)
Coordinates
chrScaffold000203:+:66021..67576
Molecular Weight (calculated)
29767.0 Da
IEP (calculated)
10.334
GRAVY (calculated)
-0.569
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFNN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSCD LKELVAKFIP EAIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDSPADE TAAEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSCD LKELVAKFIP EAIGKDIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDSPADE TAAEEPTEII GA
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Arabidopsis Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.