Factsheet for GSMUA_Achr4P16490_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	mitochondrion
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00620.t01	Wine grape	cytosol	19.27	49.53
GSMUA_Achr6P24760_001	Banana	cytosol	46.18	48.85
GSMUA_Achr3P30060_001	Banana	cytosol	45.82	48.28
GSMUA_Achr5P08700_001	Banana	cytosol	45.82	48.28
GSMUA_Achr1P22500_001	Banana	cytosol	44.73	47.13
CDY17474	Canola	cytosol	41.45	46.53
KRH35477	Soybean	nucleus	44.0	46.36
KRH77835	Soybean	nucleus	43.64	45.98
KRH27653	Soybean	endoplasmic reticulum	43.64	45.98
KRG91350	Soybean	nucleus	43.64	45.98
Zm00001d048159_P001	Maize	cytosol	43.27	45.77
KXG39941	Sorghum	cytosol	43.27	45.77
Zm00001d048157_P001	Maize	cytosol	43.27	45.77
Zm00001d028117_P002	Maize	cytosol	43.27	45.77
Os03t0200500-01	Rice	nucleus	43.27	45.42
EER99660	Sorghum	cytosol	35.64	44.95
EER99659	Sorghum	cytosol	42.91	44.87
EER99658	Sorghum	cytosol	42.55	44.49
VIT_05s0020g03900.t01	Wine grape	cytosol	42.18	44.44
VIT_14s0030g01810.t01	Wine grape	cytosol	42.18	44.44
OQU92889	Sorghum	cytosol	38.55	44.35
Solyc09g082520.2.1	Tomato	cytosol, nucleus	41.82	44.23
PGSC0003DMT400019867	Potato	cytosol	41.82	44.23
Zm00001d006766_P001	Maize	cytosol	20.73	44.19
PGSC0003DMT400083968	Potato	cytosol	41.45	43.68
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	41.45	43.68
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	41.45	43.68
Bra040119.1-P	Field mustard	cytosol	41.45	43.68
PGSC0003DMT400069575	Potato	cytosol	41.45	43.68
CDY50760	Canola	cytosol	41.09	43.13
Bra011551.1-P	Field mustard	cytosol	41.09	43.13
Bra040409.1-P	Field mustard	cytosol	41.09	43.13
CDX69078	Canola	cytosol, extracellular	41.09	43.13
CDX75453	Canola	cytosol	41.09	43.13
AT3G04840.1	Thale cress	cytosol	41.09	43.13
CDY41904	Canola	cytosol	41.09	43.13
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	41.09	42.97
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	41.09	42.97
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	41.09	42.97
CDY45324	Canola	cytosol, extracellular	40.73	42.91
Bra017669.1-P	Field mustard	cytosol	40.73	42.91
Bra034643.1-P	Field mustard	cytosol	40.73	42.91
CDX72495	Canola	cytosol	40.73	42.91
CDX76296	Canola	cytosol	40.73	42.91
AT4G34670.1	Thale cress	cytosol	40.73	42.75
CDY40680	Canola	cytosol	40.73	42.75
Bra001127.1-P	Field mustard	cytosol	40.73	42.75
CDX74165	Canola	cytosol	40.36	42.37
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	41.82	42.28
HORVU1Hr1G032060.4	Barley	cytosol	42.91	40.83
HORVU4Hr1G070370.1	Barley	cytosol, plastid	41.82	39.79
KRH53243	Soybean	cytosol, endoplasmic reticulum	37.82	39.39
CDY30019	Canola	plasma membrane	42.55	38.74
Zm00001d048158_P002	Maize	plastid	44.73	38.2
OQU90205	Sorghum	mitochondrion	38.55	36.93
HORVU6Hr1G080910.1	Barley	cytosol	10.91	33.71
KRH37543	Soybean	cytosol	21.09	26.98
CDY52999	Canola	cytosol	0.73	2.22
Bra026324.1-P	Field mustard	cytosol	0.73	2.22
GSMUA_Achr8P31000_001	Banana	cytosol	0.0	0.0
GSMUA_Achr4P16480_001	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G16490_001	EnsemblPlants:GSMUA_Achr4P16490_001	EnsemblPlants:GSMUA_Achr4T16490_001
UniProt:M0SPG3	PFAM:PF01015	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S3Ae	SMART:SM01397
UniParc:UPI000295FB50	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G16490_001]

Coordinates

chr4:-:14931469..14937804

Molecular Weight (calculated)

32282.3 Da

IEP (calculated)

11.685

GRAVY (calculated)

-0.629

Length

275 amino acids

Sequence
(BLAST)

001: MIRAVRNSNR RSKVKSFYYQ NLHFQIECAD AFSVTQTRLP TILQRTFLGH VRPLVARPLR ILRRAEGHSR RRCSCSNSYS NSHGGRVGIS VLYRSLRSLL
101: FLSRSGFSRF SLSPVFRHCS RKNKKISEGK KGGKKKTVDP FAKKDWYDIK APSVFRVRNI GKTLGNTFSI YNVLNYKQRT DLAHRKIRLR AEDVQRKNVL
201: TNFWGMDLTT DKVRCLVRKW QTLIEAHVDV KTTDNYTLRM FCIGFTKRRP NQVKRTCYAQ SSQIRQISRK MRDYC

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.