CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74165	Canola	cytosol	98.86	98.86
CDY41904	Canola	cytosol	96.18	96.18
CDY50760	Canola	cytosol	96.18	96.18
CDX72495	Canola	cytosol	92.37	92.72
CDX76296	Canola	cytosol	92.37	92.72
CDY45324	Canola	cytosol, extracellular	92.37	92.72
CDY17474	Canola	cytosol	86.64	92.65
CDX75453	Canola	cytosol	92.37	92.37
AT3G04840.1	Thale cress	cytosol	92.37	92.37
CDX69078	Canola	cytosol, extracellular	91.98	91.98
KRG91350	Soybean	nucleus	85.5	85.82
KRH35477	Soybean	nucleus	85.11	85.44
VIT_05s0020g03900.t01	Wine grape	cytosol	84.35	84.67
KRH77835	Soybean	nucleus	84.35	84.67
KRH27653	Soybean	endoplasmic reticulum	83.97	84.29
VIT_14s0030g01810.t01	Wine grape	cytosol	83.21	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.21	83.52
PGSC0003DMT400069575	Potato	cytosol	83.21	83.52
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	82.82	83.14
CDY30019	Canola	plasma membrane	95.8	83.11
GSMUA_Achr3P30060_001	Banana	cytosol	82.44	82.76
PGSC0003DMT400083968	Potato	cytosol	82.44	82.76
Zm00001d048159_P001	Maize	cytosol	82.06	82.69
Zm00001d048157_P001	Maize	cytosol	82.06	82.69
PGSC0003DMT400019867	Potato	cytosol	82.06	82.69
Zm00001d028117_P002	Maize	cytosol	81.68	82.31
Solyc09g082520.2.1	Tomato	cytosol, nucleus	81.68	82.31
KXG39941	Sorghum	cytosol	81.68	82.31
EER99659	Sorghum	cytosol	82.44	82.13
GSMUA_Achr1P22500_001	Banana	cytosol	81.68	81.99
EER99658	Sorghum	cytosol	82.06	81.75
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	82.06	81.75
GSMUA_Achr6P24760_001	Banana	cytosol	80.92	81.54
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	81.68	81.37
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	81.68	81.37
Os03t0200500-01	Rice	nucleus	80.92	80.92
OQU92889	Sorghum	cytosol	73.66	80.75
GSMUA_Achr5P08700_001	Banana	cytosol	80.15	80.46
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.06	79.04
VIT_05s0094g00620.t01	Wine grape	cytosol	31.3	76.64
EER99660	Sorghum	cytosol	62.98	75.69
Zm00001d006766_P001	Maize	cytosol	37.02	75.19
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.05	73.48
HORVU4Hr1G070370.1	Barley	cytosol, plastid	80.92	73.36
HORVU1Hr1G032060.4	Barley	cytosol	79.77	72.32
CDY52999	Canola	cytosol	24.43	71.11
OQU90205	Sorghum	mitochondrion	73.66	67.25
Zm00001d048158_P002	Maize	plastid	82.06	66.77
HORVU6Hr1G080910.1	Barley	cytosol	22.52	66.29
GSMUA_Achr8P31000_001	Banana	cytosol	15.27	63.49
GSMUA_Achr4P16480_001	Banana	cytosol	7.63	62.5
KRH37543	Soybean	cytosol	44.27	53.95
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	42.75	40.73

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078HQ29	UniProt:A0A078HQ29	EnsemblPlants:CDY40680	ProteinID:CDY40680	ProteinID:CDY40680.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00071563001
HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S1/3_euk
InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI0004EF0A2B	SEG:seg	:

Description

BnaC03g33960D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078HQ29]

Coordinates

chrLK032477:+:133499..135053

Molecular Weight (calculated)

29863.2 Da

IEP (calculated)

10.478

GRAVY (calculated)

-0.561

Length

262 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IESHVDVKTT DNFTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRSKMRE IMIKEASSSD LKELVAKFIP ESIGKEIDKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TVVEEPTEII GA

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.