CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	KRH03376	AT3G48100.1	18642946
AT4G34670.1	KRH54462	AT3G48100.1	18642946
AT4G34670.1	KRH57009	AT3G48100.1	18642946
AT4G34670.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P31000_001	Banana	cytosol	19.07	65.08
KRG91350	Soybean	nucleus	61.86	50.96
KRH35477	Soybean	nucleus	61.4	50.57
OQU92889	Sorghum	cytosol	55.35	49.79
KRH77835	Soybean	nucleus	60.0	49.43
KRH27653	Soybean	endoplasmic reticulum	60.0	49.43
GSMUA_Achr3P30060_001	Banana	cytosol	57.21	47.13
VIT_05s0020g03900.t01	Wine grape	cytosol	57.21	47.13
KRH53243	Soybean	cytosol, endoplasmic reticulum	57.67	46.97
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	56.74	46.39
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	56.74	46.39
Os03t0200500-01	Rice	nucleus	56.28	46.18
Zm00001d048157_P001	Maize	cytosol	55.81	46.15
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	56.28	46.01
KXG39941	Sorghum	cytosol	55.35	45.77
GSMUA_Achr6P24760_001	Banana	cytosol	55.35	45.77
Zm00001d048159_P001	Maize	cytosol	55.35	45.77
Zm00001d028117_P002	Maize	cytosol	55.35	45.77
GSMUA_Achr1P22500_001	Banana	cytosol	55.35	45.59
CDY41904	Canola	cytosol	55.35	45.42
CDY50760	Canola	cytosol	55.35	45.42
Bra040409.1-P	Field mustard	cytosol	55.35	45.42
GSMUA_Achr5P08700_001	Banana	cytosol	54.88	45.21
Bra017669.1-P	Field mustard	cytosol	54.88	45.21
CDX72495	Canola	cytosol	54.88	45.21
CDY45324	Canola	cytosol, extracellular	54.88	45.21
PGSC0003DMT400019867	Potato	cytosol	54.42	45.0
CDX75453	Canola	cytosol	54.42	44.66
CDX69078	Canola	cytosol, extracellular	54.42	44.66
Bra011551.1-P	Field mustard	cytosol	54.42	44.66
Bra001127.1-P	Field mustard	cytosol	54.42	44.66
Solyc09g082520.2.1	Tomato	cytosol, nucleus	53.95	44.62
EER99659	Sorghum	cytosol	54.42	44.49
EER99658	Sorghum	cytosol	54.42	44.49
CDX74165	Canola	cytosol	53.95	44.27
CDY40680	Canola	cytosol	53.95	44.27
CDX76296	Canola	cytosol	53.49	44.06
Bra040119.1-P	Field mustard	cytosol	53.49	44.06
Bra034643.1-P	Field mustard	cytosol	53.49	44.06
AT4G34670.1	Thale cress	cytosol	53.49	43.89
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	54.88	43.38
AT3G04840.1	Thale cress	cytosol	52.56	43.13
HORVU4Hr1G070370.1	Barley	cytosol, plastid	57.67	42.91
HORVU1Hr1G032060.4	Barley	cytosol	57.21	42.56
CDY17474	Canola	cytosol	47.44	41.63
CDY52999	Canola	cytosol	17.21	41.11
Bra026324.1-P	Field mustard	cytosol	17.21	41.11
OQU90205	Sorghum	mitochondrion	54.42	40.77
Zm00001d006766_P001	Maize	cytosol	23.72	39.53
EER99660	Sorghum	cytosol	39.07	38.53
CDY30019	Canola	plasma membrane	53.95	38.41
Zm00001d048158_P002	Maize	plastid	55.35	36.96
HORVU6Hr1G080910.1	Barley	cytosol	10.7	25.84
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	26.98	21.09
GSMUA_Achr4P16480_001	Banana	cytosol	1.4	9.38

Protein Annotations

MapMan:35.1	EMBL:ACUP02005463	EnsemblPlantsGene:GLYMA_09G072600	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:K7LCA6	EnsemblPlants:KRH37543	ProteinID:KRH37543	ProteinID:KRH37543.1	PFAM:PF01015
PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S3Ae	SMART:SM01397	UniParc:UPI0002956B24	:

Description

hypothetical protein

Coordinates

chr9:+:7589969..7592754

Molecular Weight (calculated)

24138.7 Da

IEP (calculated)

10.387

GRAVY (calculated)

-0.403

Length

215 amino acids

Sequence
(BLAST)

001: MDACIPPQGL QQILVHEGTH VVRQHLPPQS KLKHRVFKVS LVDLQGDEDH AFKKIRLRAE NVQGKNVLTN LWGMDLTTDK LRSLVRKWQT LIEAHVHVKT
101: IDNHTLRTNI HRKMREIMTN QATSCDLKEL VRKFIPEIIG KDIGKATSSI DPVKNVFDRK VKILKAPKFD LGKLMEGGKI RFKLGAELSG VDGVVIEEGT
201: TGDGGKDVAQ KGMCK

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.