Factsheet for Zm00001d028117_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048159_P001	Maize	cytosol	99.23	99.23
Zm00001d048157_P001	Maize	cytosol	99.23	99.23
KXG39941	Sorghum	cytosol	98.46	98.46
Os03t0200500-01	Rice	nucleus	92.31	91.6
GSMUA_Achr3P30060_001	Banana	cytosol	86.54	86.21
GSMUA_Achr1P22500_001	Banana	cytosol	86.54	86.21
GSMUA_Achr6P24760_001	Banana	cytosol	85.0	85.0
PGSC0003DMT400069575	Potato	cytosol	84.23	83.91
PGSC0003DMT400083968	Potato	cytosol	84.23	83.91
GSMUA_Achr5P08700_001	Banana	cytosol	84.23	83.91
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.85	83.52
KRH77835	Soybean	nucleus	83.46	83.14
KRH27653	Soybean	endoplasmic reticulum	83.46	83.14
VIT_05s0020g03900.t01	Wine grape	cytosol	83.46	83.14
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.08	82.76
KRH35477	Soybean	nucleus	83.08	82.76
CDY41904	Canola	cytosol	83.08	82.44
CDY50760	Canola	cytosol	83.08	82.44
CDX72495	Canola	cytosol	82.69	82.38
Bra017669.1-P	Field mustard	cytosol	82.69	82.38
KRG91350	Soybean	nucleus	82.69	82.38
VIT_14s0030g01810.t01	Wine grape	cytosol	82.69	82.38
CDY45324	Canola	cytosol, extracellular	82.69	82.38
CDX76296	Canola	cytosol	82.69	82.38
PGSC0003DMT400019867	Potato	cytosol	82.31	82.31
Zm00001d006766_P001	Maize	cytosol	40.77	82.17
CDX69078	Canola	cytosol, extracellular	82.69	82.06
Bra040409.1-P	Field mustard	cytosol	82.69	82.06
Bra001127.1-P	Field mustard	cytosol	82.69	82.06
CDX75453	Canola	cytosol	82.69	82.06
Bra034643.1-P	Field mustard	cytosol	82.31	81.99
Solyc09g082520.2.1	Tomato	cytosol, nucleus	81.92	81.92
Bra011551.1-P	Field mustard	cytosol	82.31	81.68
CDX74165	Canola	cytosol	82.31	81.68
CDY40680	Canola	cytosol	82.31	81.68
Bra040119.1-P	Field mustard	cytosol	81.92	81.61
CDY17474	Canola	cytosol	76.54	81.22
AT4G34670.1	Thale cress	cytosol	81.54	80.92
AT3G04840.1	Thale cress	cytosol	81.15	80.53
Zm00001d048158_P002	Maize	plastid	99.23	80.12
VIT_05s0094g00620.t01	Wine grape	cytosol	31.15	75.7
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.62	73.48
GSMUA_Achr8P31000_001	Banana	cytosol	17.69	73.02
CDY30019	Canola	plasma membrane	82.69	71.19
GSMUA_Achr4P16480_001	Banana	cytosol	7.31	59.38
KRH37543	Soybean	cytosol	45.77	55.35
CDY52999	Canola	cytosol	18.08	52.22
Bra026324.1-P	Field mustard	cytosol	18.08	52.22
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	45.77	43.27

Protein Annotations

EntrezGene:100282717	MapMan:17.1.3.1.4	UniProt:B6TAQ5	EMBL:BT065729	EMBL:EU962070	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03122	ProteinID:ONL94756.1
ProteinID:ONL94757.1	ProteinID:ONL94759.1	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF13
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000182C653	EnsemblPlantsGene:Zm00001d028117
EnsemblPlants:Zm00001d028117_P002	EnsemblPlants:Zm00001d028117_T002	SEG:seg	:	:	:

Description

40S ribosomal protein S3a-2

Coordinates

chr1:-:23321795..23325398

Molecular Weight (calculated)

29743.3 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.499

Length

260 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKT VDPFSKKDWY DIKAPSVFSV RNIGKTLVSR TQGTRIASDG LKHRVFEVCL ADLQGDEDQA YRKIRLRAED VQGRNVLTNF
101: WGMNFTTDKL RSLVKKWQTL IEAHVDVKTT DNYMLRLFCI GFTKRRPNQV KRTCYAQASQ IRQIRRKMVE IMINQASTCD LKELVSKFIP EVIGKEIEKS
201: TSSIFPLQNV FIRKVKILKA PKFDLGKLME VHGDYKEDVG VKLERPVEGD EAMQEVAAAE

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.