Factsheet for GSMUA_Achr1P22500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08700_001	Banana	cytosol	95.02	95.02
GSMUA_Achr3P30060_001	Banana	cytosol	92.72	92.72
GSMUA_Achr6P24760_001	Banana	cytosol	91.19	91.54
EER99659	Sorghum	cytosol	88.51	87.83
EER99658	Sorghum	cytosol	88.12	87.45
Os03t0200500-01	Rice	nucleus	87.36	87.02
Zm00001d048159_P001	Maize	cytosol	86.59	86.92
KXG39941	Sorghum	cytosol	86.59	86.92
Zm00001d048157_P001	Maize	cytosol	86.59	86.92
Zm00001d028117_P002	Maize	cytosol	86.21	86.54
KRH27653	Soybean	endoplasmic reticulum	85.44	85.44
OQU92889	Sorghum	cytosol	78.16	85.36
KRH77835	Soybean	nucleus	85.06	85.06
PGSC0003DMT400019867	Potato	cytosol	84.67	85.0
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	85.44	84.79
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	85.44	84.79
VIT_05s0020g03900.t01	Wine grape	cytosol	84.67	84.67
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	84.67	84.67
KRH35477	Soybean	nucleus	84.67	84.67
PGSC0003DMT400069575	Potato	cytosol	84.67	84.67
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	85.06	84.41
KRG91350	Soybean	nucleus	84.29	84.29
PGSC0003DMT400083968	Potato	cytosol	84.29	84.29
Solyc09g082520.2.1	Tomato	cytosol, nucleus	83.91	84.23
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.91	83.91
VIT_14s0030g01810.t01	Wine grape	cytosol	83.91	83.91
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	86.59	83.09
CDY50760	Canola	cytosol	83.14	82.82
CDY41904	Canola	cytosol	83.14	82.82
Bra040409.1-P	Field mustard	cytosol	82.76	82.44
CDY45324	Canola	cytosol, extracellular	82.38	82.38
CDX72495	Canola	cytosol	82.38	82.38
Bra017669.1-P	Field mustard	cytosol	82.38	82.38
AT4G34670.1	Thale cress	cytosol	82.38	82.06
AT3G04840.1	Thale cress	cytosol	82.38	82.06
Bra001127.1-P	Field mustard	cytosol	82.38	82.06
Bra040119.1-P	Field mustard	cytosol	81.99	81.99
CDX69078	Canola	cytosol, extracellular	81.99	81.68
CDX74165	Canola	cytosol	81.99	81.68
CDX75453	Canola	cytosol	81.99	81.68
CDY40680	Canola	cytosol	81.99	81.68
Bra011551.1-P	Field mustard	cytosol	81.61	81.3
CDX76296	Canola	cytosol	81.23	81.23
Bra034643.1-P	Field mustard	cytosol	80.84	80.84
CDY17474	Canola	cytosol	75.48	80.41
Zm00001d006766_P001	Maize	cytosol	39.08	79.07
GSMUA_Achr4P16480_001	Banana	cytosol	9.58	78.12
EER99660	Sorghum	cytosol	65.13	77.98
VIT_05s0094g00620.t01	Wine grape	cytosol	31.8	77.57
HORVU1Hr1G032060.4	Barley	cytosol	85.82	77.51
HORVU4Hr1G070370.1	Barley	cytosol, plastid	85.06	76.82
GSMUA_Achr8P31000_001	Banana	cytosol	18.39	76.19
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.71	73.86
CDY30019	Canola	plasma membrane	82.76	71.52
OQU90205	Sorghum	mitochondrion	78.16	71.08
Zm00001d048158_P002	Maize	plastid	86.59	70.19
HORVU6Hr1G080910.1	Barley	cytosol	21.84	64.04
KRH37543	Soybean	cytosol	45.59	55.35
CDY52999	Canola	cytosol	18.77	54.44
Bra026324.1-P	Field mustard	cytosol	18.77	54.44
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	47.13	44.73

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr1G22500_001	EnsemblPlants:GSMUA_Achr1P22500_001	EnsemblPlants:GSMUA_Achr1T22500_001	UniProt:M0S258	HAMAP:MF_03122	PFAM:PF01015
ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI0002953191	SEG:seg	:	:	:

Description

40S ribosomal protein S3a [Source:GMGC_GENE;Acc:GSMUA_Achr1G22500_001]

Coordinates

chr1:-:16976262..16978914

Molecular Weight (calculated)

29932.4 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.596

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKT VDPFSKKDWY DIKAPSVFNV RNIGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDQA HRKIRLRSED VQGKNVLTNF
101: WGMDLTTDKL RHIVRRWQTL IEAHVDVKTT DNYTLRLFCI AFTKRRPNQV KRTCYAQSSQ IRQIRRKMRE IMVNQATTCD LKDLVLKFIP DVIGKEIEKA
201: TSSIFPLQNV YIRKVKILKA PKFDLGKLME VHGDYKEDVG VKVDRPAEDV QMEGESEVAG A

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.