Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 89.97 | 98.86 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 89.62 | 98.48 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 89.62 | 98.48 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 77.51 | 85.82 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 76.82 | 85.06 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 76.82 | 85.06 |
| PGSC0003DMT400069575 | Potato | cytosol | 76.47 | 84.67 |
| KRG91350 | Soybean | nucleus | 76.47 | 84.67 |
| KRH77835 | Soybean | nucleus | 76.12 | 84.29 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 76.12 | 84.29 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 75.78 | 84.23 |
| PGSC0003DMT400083968 | Potato | cytosol | 75.78 | 83.91 |
| KRH35477 | Soybean | nucleus | 75.78 | 83.91 |
| KRH27653 | Soybean | endoplasmic reticulum | 75.78 | 83.91 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 75.78 | 83.91 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 75.43 | 83.52 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 75.09 | 83.14 |
| AT4G34670.1 | Thale cress | cytosol | 75.09 | 82.82 |
| CDY17474 | Canola | cytosol | 69.9 | 82.45 |
| CDX76296 | Canola | cytosol | 74.39 | 82.38 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 82.35 | 82.35 |
| PGSC0003DMT400019867 | Potato | cytosol | 74.05 | 82.31 |
| CDY45324 | Canola | cytosol, extracellular | 74.05 | 81.99 |
| CDX72495 | Canola | cytosol | 74.05 | 81.99 |
| Bra017669.1-P | Field mustard | cytosol | 74.05 | 81.99 |
| Bra034643.1-P | Field mustard | cytosol | 74.05 | 81.99 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 73.7 | 81.92 |
| Bra040119.1-P | Field mustard | cytosol | 73.7 | 81.61 |
| CDX69078 | Canola | cytosol, extracellular | 73.7 | 81.3 |
| CDX75453 | Canola | cytosol | 73.7 | 81.3 |
| Bra001127.1-P | Field mustard | cytosol | 73.7 | 81.3 |
| Bra011551.1-P | Field mustard | cytosol | 73.36 | 80.92 |
| CDX74165 | Canola | cytosol | 73.36 | 80.92 |
| CDY40680 | Canola | cytosol | 73.36 | 80.92 |
| CDY41904 | Canola | cytosol | 73.36 | 80.92 |
| CDY50760 | Canola | cytosol | 73.36 | 80.92 |
| Bra040409.1-P | Field mustard | cytosol | 73.01 | 80.53 |
| AT3G04840.1 | Thale cress | cytosol | 73.01 | 80.53 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 27.68 | 74.77 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 67.82 | 74.24 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 22.49 | 73.03 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 15.92 | 73.02 |
| CDY30019 | Canola | plasma membrane | 74.74 | 71.52 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 6.92 | 62.5 |
| KRH37543 | Soybean | cytosol | 42.91 | 57.67 |
| Bra026324.1-P | Field mustard | cytosol | 16.26 | 52.22 |
| CDY52999 | Canola | cytosol | 16.26 | 52.22 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 39.79 | 41.82 |
Protein Annotations
| MapMan:17.1.3.1.4 | UniProt:A0A287PJU2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 |
| EnsemblPlantsGene:HORVU4Hr1G070370 | EnsemblPlants:HORVU4Hr1G070370.1 | HAMAP:MF_03122 | PFAM:PF01015 | ScanProsite:PS01191 | PANTHER:PTHR11830 |
| PANTHER:PTHR11830:SF13 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS | SMART:SM01397 | UniParc:UPI000B477436 |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A287PJU2]
Coordinates
chrchr4H:+:575312651..575314951
Molecular Weight (calculated)
32767.9 Da
IEP (calculated)
10.666
GRAVY (calculated)
-0.585
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: PLEPKKPRPS SRHSTRRSAA PPPAAATMAV GKNKRISKGR KGSKKKAVDP FTKKQWYDIK APLLFTSRNV GKTLVSRTQG TKIASEGLKH RVFEVSLADL
101: QNDEDQAYRK IRLRAEDVQG MNVLTNFWGM DFTTDKLRSL VRKWQTLIEA HVDVKTTDNY MLRMFAIGFT KRRPNQVKRT CYAQASQIRQ IRRKMVEIMV
201: NQAASCDLKE LVNKFIPEVI GKEIEKATSS IFPLQNVYVR KVKILKAPKF DLGKLMEVHG DYKEDVGVKL DRPDGDEVIP GAEEVAAAE
101: QNDEDQAYRK IRLRAEDVQG MNVLTNFWGM DFTTDKLRSL VRKWQTLIEA HVDVKTTDNY MLRMFAIGFT KRRPNQVKRT CYAQASQIRQ IRRKMVEIMV
201: NQAASCDLKE LVNKFIPEVI GKEIEKATSS IFPLQNVYVR KVKILKAPKF DLGKLMEVHG DYKEDVGVKL DRPDGDEVIP GAEEVAAAE
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Arabidopsis Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.