Factsheet for HORVU6Hr1G080910.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00620.t01	Wine grape	cytosol	59.55	49.53
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	73.03	24.71
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	73.03	24.71
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	73.03	24.71
CDY17474	Canola	cytosol	66.29	24.08
Bra040119.1-P	Field mustard	cytosol	66.29	22.61
Bra001127.1-P	Field mustard	cytosol	66.29	22.52
CDY40680	Canola	cytosol	66.29	22.52
CDX74165	Canola	cytosol	66.29	22.52
HORVU4Hr1G070370.1	Barley	cytosol, plastid	73.03	22.49
CDX76296	Canola	cytosol	65.17	22.22
Bra034643.1-P	Field mustard	cytosol	65.17	22.22
GSMUA_Achr3P30060_001	Banana	cytosol	65.17	22.22
AT4G34670.1	Thale cress	cytosol	65.17	22.14
Bra040409.1-P	Field mustard	cytosol	65.17	22.14
CDY41904	Canola	cytosol	65.17	22.14
CDY50760	Canola	cytosol	65.17	22.14
CDX72495	Canola	cytosol	64.04	21.84
GSMUA_Achr5P08700_001	Banana	cytosol	64.04	21.84
CDY45324	Canola	cytosol, extracellular	64.04	21.84
GSMUA_Achr1P22500_001	Banana	cytosol	64.04	21.84
Bra017669.1-P	Field mustard	cytosol	64.04	21.84
CDX69078	Canola	cytosol, extracellular	64.04	21.76
Bra011551.1-P	Field mustard	cytosol	64.04	21.76
AT3G04840.1	Thale cress	cytosol	64.04	21.76
CDX75453	Canola	cytosol	64.04	21.76
GSMUA_Achr6P24760_001	Banana	cytosol	62.92	21.54
VIT_05s0020g03900.t01	Wine grape	cytosol	62.92	21.46
VIT_14s0030g01810.t01	Wine grape	cytosol	62.92	21.46
KRG91350	Soybean	nucleus	60.67	20.69
PGSC0003DMT400069575	Potato	cytosol	60.67	20.69
Solyc09g082520.2.1	Tomato	cytosol, nucleus	59.55	20.38
PGSC0003DMT400019867	Potato	cytosol	59.55	20.38
KRH35477	Soybean	nucleus	59.55	20.31
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	59.55	20.31
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	59.55	20.31
KRH77835	Soybean	nucleus	59.55	20.31
HORVU1Hr1G032060.4	Barley	cytosol	65.17	20.07
PGSC0003DMT400083968	Potato	cytosol	58.43	19.92
KRH27653	Soybean	endoplasmic reticulum	58.43	19.92
KRH53243	Soybean	cytosol, endoplasmic reticulum	58.43	19.7
CDY30019	Canola	plasma membrane	66.29	19.54
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	33.71	10.91
KRH37543	Soybean	cytosol	25.84	10.7
GSMUA_Achr8P31000_001	Banana	cytosol	0.0	0.0
GSMUA_Achr4P16480_001	Banana	cytosol	0.0	0.0
CDY52999	Canola	cytosol	0.0	0.0
Bra026324.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A287UW54	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G080910	EnsemblPlants:HORVU6Hr1G080910.1
PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI000B486F30	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:543522897..543532606

Molecular Weight (calculated)

10513.5 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.760

Length

89 amino acids

Sequence
(BLAST)

1: HELAELEARR ERVKQNVERI VDPFTKKQWY DIKAPLLFTS RNVGKTLVSR TQGTKIALEG LKHRVFEVSL DDLQNDEDQA YRKISLREF

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.