Factsheet for Solyc06g072490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069575	Potato	cytosol	99.23	99.23
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	98.85	98.85
Solyc09g082520.2.1	Tomato	cytosol, nucleus	89.66	90.0
VIT_14s0030g01810.t01	Wine grape	cytosol	88.51	88.51
GSMUA_Achr3P30060_001	Banana	cytosol	85.82	85.82
Bra017669.1-P	Field mustard	cytosol	85.44	85.44
CDX72495	Canola	cytosol	85.44	85.44
CDY45324	Canola	cytosol, extracellular	85.44	85.44
GSMUA_Achr5P08700_001	Banana	cytosol	85.06	85.06
AT4G34670.1	Thale cress	cytosol	85.06	84.73
GSMUA_Achr1P22500_001	Banana	cytosol	84.67	84.67
Os03t0200500-01	Rice	nucleus	84.67	84.35
CDX75453	Canola	cytosol	84.67	84.35
Zm00001d048159_P001	Maize	cytosol	83.91	84.23
Zm00001d048157_P001	Maize	cytosol	83.91	84.23
KXG39941	Sorghum	cytosol	83.91	84.23
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	84.67	84.03
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	84.67	84.03
Bra011551.1-P	Field mustard	cytosol	84.29	83.97
CDX69078	Canola	cytosol, extracellular	84.29	83.97
Bra040119.1-P	Field mustard	cytosol	83.91	83.91
Zm00001d028117_P002	Maize	cytosol	83.52	83.85
OQU92889	Sorghum	cytosol	76.63	83.68
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	84.29	83.65
CDY41904	Canola	cytosol	83.91	83.59
CDY50760	Canola	cytosol	83.91	83.59
CDX76296	Canola	cytosol	83.52	83.52
EER99659	Sorghum	cytosol	83.91	83.27
Bra040409.1-P	Field mustard	cytosol	83.52	83.21
AT3G04840.1	Thale cress	cytosol	83.52	83.21
Bra001127.1-P	Field mustard	cytosol	83.52	83.21
CDY40680	Canola	cytosol	83.52	83.21
CDX74165	Canola	cytosol	83.52	83.21
Bra034643.1-P	Field mustard	cytosol	83.14	83.14
GSMUA_Achr6P24760_001	Banana	cytosol	82.76	83.08
EER99658	Sorghum	cytosol	83.52	82.89
CDY17474	Canola	cytosol	77.78	82.86
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.14	79.78
VIT_05s0094g00620.t01	Wine grape	cytosol	31.42	76.64
HORVU4Hr1G070370.1	Barley	cytosol, plastid	84.29	76.12
HORVU1Hr1G032060.4	Barley	cytosol	83.52	75.43
Zm00001d006766_P001	Maize	cytosol	36.78	74.42
EER99660	Sorghum	cytosol	62.07	74.31
GSMUA_Achr8P31000_001	Banana	cytosol	17.62	73.02
CDY30019	Canola	plasma membrane	83.91	72.52
OQU90205	Sorghum	mitochondrion	75.86	68.99
Zm00001d048158_P002	Maize	plastid	83.91	68.01
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
HORVU6Hr1G080910.1	Barley	cytosol	20.31	59.55
CDY52999	Canola	cytosol	20.31	58.89
Bra026324.1-P	Field mustard	cytosol	20.31	58.89
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.68	41.45

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	UniProt:K4C8W9	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	EnsemblPlantsGene:Solyc06g072490.2
EnsemblPlants:Solyc06g072490.2.1	UniParc:UPI000276599C	SEG:seg	:	:	:

Description

40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:K4C8W9]

Coordinates

chr6:+:44709989..44712797

Molecular Weight (calculated)

29738.1 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.611

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFEI KNVGKTLVTR TQGTKIASEG LKHRVFEVSL ADLQKDEDQA FRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI AFTKKRPNQQ KRTCYAQSSQ IRQIRRKMVE IMRNQASSCD LKELVAKFIP ESIGREIEKA
201: TSSIFPLQNV YIRKVKILKA PKFDLGKLME VHGDYSEDVG VKLDRPAEET VAEAETEVPG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.