Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 37.61 | 76.64 |
| OQU92889 | Sorghum | cytosol | 80.28 | 73.22 |
| EER99659 | Sorghum | cytosol | 86.7 | 71.86 |
| EER99658 | Sorghum | cytosol | 86.24 | 71.48 |
| KXG39941 | Sorghum | cytosol | 84.4 | 70.77 |
| OQU90205 | Sorghum | mitochondrion | 90.37 | 68.64 |
| Os03t0200500-01 | Rice | nucleus | 82.11 | 68.32 |
| Zm00001d006766_P001 | Maize | cytosol | 39.91 | 67.44 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 77.98 | 65.13 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 77.98 | 65.13 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 77.52 | 64.75 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 77.06 | 64.37 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 76.15 | 63.85 |
| CDY41904 | Canola | cytosol | 76.61 | 63.74 |
| CDY50760 | Canola | cytosol | 76.61 | 63.74 |
| CDX75453 | Canola | cytosol | 76.61 | 63.74 |
| CDX69078 | Canola | cytosol, extracellular | 76.61 | 63.74 |
| CDX76296 | Canola | cytosol | 76.15 | 63.6 |
| CDY45324 | Canola | cytosol, extracellular | 76.15 | 63.6 |
| CDX72495 | Canola | cytosol | 76.15 | 63.6 |
| Bra017669.1-P | Field mustard | cytosol | 76.15 | 63.6 |
| Bra034643.1-P | Field mustard | cytosol | 76.15 | 63.6 |
| Bra011551.1-P | Field mustard | cytosol | 76.15 | 63.36 |
| Bra040409.1-P | Field mustard | cytosol | 76.15 | 63.36 |
| KRH77835 | Soybean | nucleus | 75.69 | 63.22 |
| Bra040119.1-P | Field mustard | cytosol | 75.69 | 63.22 |
| CDY40680 | Canola | cytosol | 75.69 | 62.98 |
| Bra001127.1-P | Field mustard | cytosol | 75.69 | 62.98 |
| CDX74165 | Canola | cytosol | 75.69 | 62.98 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 75.23 | 62.84 |
| KRH27653 | Soybean | endoplasmic reticulum | 75.23 | 62.84 |
| PGSC0003DMT400069575 | Potato | cytosol | 74.77 | 62.45 |
| PGSC0003DMT400019867 | Potato | cytosol | 74.31 | 62.31 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 74.31 | 62.31 |
| AT4G34670.1 | Thale cress | cytosol | 74.77 | 62.21 |
| AT3G04840.1 | Thale cress | cytosol | 74.77 | 62.21 |
| KRH35477 | Soybean | nucleus | 74.31 | 62.07 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 74.31 | 62.07 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 74.31 | 62.07 |
| KRG91350 | Soybean | nucleus | 73.85 | 61.69 |
| PGSC0003DMT400083968 | Potato | cytosol | 73.85 | 61.69 |
| CDY17474 | Canola | cytosol | 69.27 | 61.63 |
| CDY30019 | Canola | plasma membrane | 76.15 | 54.97 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 66.06 | 54.55 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 7.8 | 53.12 |
| KRH37543 | Soybean | cytosol | 38.53 | 39.07 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 44.95 | 35.64 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 8.72 | 30.16 |
| CDY52999 | Canola | cytosol | 8.26 | 20.0 |
| Bra026324.1-P | Field mustard | cytosol | 8.26 | 20.0 |
Protein Annotations
| MapMan:17.1.3.1.4 | UniProt:C5XD93 | EnsemblPlants:EER99660 | ProteinID:EER99660 | ProteinID:EER99660.1 | GO:GO:0002181 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | HAMAP:MF_03122 |
| PFAM:PF01015 | ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF13 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae |
| InterPro:Ribosomal_S3Ae_CS | SMART:SM01397 | EnsemblPlantsGene:SORBI_3002G364600 | UniParc:UPI0001A83CAF | RefSeq:XP_002463139.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:72524465..72527225
Molecular Weight (calculated)
24655.8 Da
IEP (calculated)
10.577
GRAVY (calculated)
-0.593
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKSIS KSKKGGKKKT VDPFSKKDWY DIKAPSVFSV RNIGKTLVSR TQGTKIASEG LKHRVFEASL ADLQSDEDQA YRKIRLRAED VQGRNVLTNF
101: WGMSFTTDKL RSLVKKWQTL TEAHVDVKTT DNYMLRLFCI GFTKRRPNQV KRTCYAQASQ IRQNVFIRKV KILKAPKFDI GKLMEVHGDY AKDDVGVHIE
201: RPAEGDLAMG GQEVAASE
101: WGMSFTTDKL RSLVKKWQTL TEAHVDVKTT DNYMLRLFCI GFTKRRPNQV KRTCYAQASQ IRQNVFIRKV KILKAPKFDI GKLMEVHGDY AKDDVGVHIE
201: RPAEGDLAMG GQEVAASE
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA
Arabidopsis Description
RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.