CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	KRH03376	AT3G48100.1	18642946
AT4G34670.1	KRH54462	AT3G48100.1	18642946
AT4G34670.1	KRH57009	AT3G48100.1	18642946
AT4G34670.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27653	Soybean	endoplasmic reticulum	98.08	98.08
KRH35477	Soybean	nucleus	96.17	96.17
KRG91350	Soybean	nucleus	95.4	95.4
PGSC0003DMT400019867	Potato	cytosol	88.12	88.46
VIT_05s0020g03900.t01	Wine grape	cytosol	88.12	88.12
Solyc09g082520.2.1	Tomato	cytosol, nucleus	87.74	88.08
GSMUA_Achr6P24760_001	Banana	cytosol	87.36	87.69
GSMUA_Achr3P30060_001	Banana	cytosol	86.97	86.97
CDX76296	Canola	cytosol	86.59	86.59
Bra034643.1-P	Field mustard	cytosol	86.21	86.21
CDY17474	Canola	cytosol	80.84	86.12
CDY41904	Canola	cytosol	86.21	85.88
CDY50760	Canola	cytosol	86.21	85.88
GSMUA_Achr5P08700_001	Banana	cytosol	85.82	85.82
CDX75453	Canola	cytosol	85.82	85.5
CDX69078	Canola	cytosol, extracellular	85.82	85.5
Bra040409.1-P	Field mustard	cytosol	85.82	85.5
AT4G34670.1	Thale cress	cytosol	85.44	85.11
Bra011551.1-P	Field mustard	cytosol	85.44	85.11
GSMUA_Achr1P22500_001	Banana	cytosol	85.06	85.06
CDX72495	Canola	cytosol	84.67	84.67
CDY45324	Canola	cytosol, extracellular	84.67	84.67
Bra017669.1-P	Field mustard	cytosol	84.67	84.67
KRH53243	Soybean	cytosol, endoplasmic reticulum	85.44	84.47
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	85.06	84.41
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	85.06	84.41
CDY40680	Canola	cytosol	84.67	84.35
Bra001127.1-P	Field mustard	cytosol	84.67	84.35
CDX74165	Canola	cytosol	84.67	84.35
Bra040119.1-P	Field mustard	cytosol	84.29	84.29
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	84.67	84.03
Os03t0200500-01	Rice	nucleus	84.29	83.97
AT3G04840.1	Thale cress	cytosol	84.29	83.97
KXG39941	Sorghum	cytosol	83.52	83.85
Zm00001d048157_P001	Maize	cytosol	83.52	83.85
Zm00001d048159_P001	Maize	cytosol	83.52	83.85
EER99659	Sorghum	cytosol	84.29	83.65
Zm00001d028117_P002	Maize	cytosol	83.14	83.46
EER99658	Sorghum	cytosol	83.91	83.27
OQU92889	Sorghum	cytosol	75.86	82.85
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.52	80.15
Zm00001d006766_P001	Maize	cytosol	37.93	76.74
HORVU4Hr1G070370.1	Barley	cytosol, plastid	84.29	76.12
EER99660	Sorghum	cytosol	63.22	75.69
HORVU1Hr1G032060.4	Barley	cytosol	82.38	74.39
GSMUA_Achr8P31000_001	Banana	cytosol	17.62	73.02
CDY30019	Canola	plasma membrane	84.29	72.85
OQU90205	Sorghum	mitochondrion	76.63	69.69
Zm00001d048158_P002	Maize	plastid	83.52	67.7
GSMUA_Achr4P16480_001	Banana	cytosol	8.05	65.62
KRH37543	Soybean	cytosol	49.43	60.0
HORVU6Hr1G080910.1	Barley	cytosol	20.31	59.55
CDY52999	Canola	cytosol	19.92	57.78
Bra026324.1-P	Field mustard	cytosol	19.92	57.78
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	45.98	43.64

Protein Annotations

EntrezGene:100805519	MapMan:17.1.3.1.4	EMBL:ACUP02000685	EMBL:BT098700	UniProt:C6TLV6	EnsemblPlantsGene:GLYMA_01G236600
GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlants:KRH77835	ProteinID:KRH77835	ProteinID:KRH77835.1	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191
PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397
UniParc:UPI0001B17106	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:56194818..56197381

Molecular Weight (calculated)

29641.1 Da

IEP (calculated)

10.497

GRAVY (calculated)

-0.537

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPFAKKDWY DIKAPSVFQV KNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDHA FKKIRLRAED VQGKNVLTNF
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYTLRMFCI GFTKRRSNQV KRTCYAQSSQ VRQIRRKMRE IMVNQAAACD LKELVRKFIP EMIGKEIEKA
201: TSSIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYSEDVG AKVDRPADET LAEEATEVVG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.