Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G04840.1 | Thale cress | cytosol | 94.27 | 94.27 |
| CDY17474 | Canola | cytosol | 87.79 | 93.88 |
| CDX76296 | Canola | cytosol | 93.51 | 93.87 |
| Bra034643.1-P | Field mustard | cytosol | 93.13 | 93.49 |
| CDX69078 | Canola | cytosol, extracellular | 93.13 | 93.13 |
| Bra017669.1-P | Field mustard | cytosol | 92.75 | 93.1 |
| CDX72495 | Canola | cytosol | 92.75 | 93.1 |
| CDY45324 | Canola | cytosol, extracellular | 92.75 | 93.1 |
| CDX75453 | Canola | cytosol | 92.75 | 92.75 |
| Bra011551.1-P | Field mustard | cytosol | 92.37 | 92.37 |
| KRG91350 | Soybean | nucleus | 85.5 | 85.82 |
| KRH35477 | Soybean | nucleus | 85.11 | 85.44 |
| KRH77835 | Soybean | nucleus | 85.11 | 85.44 |
| PGSC0003DMT400069575 | Potato | cytosol | 84.73 | 85.06 |
| Solyc06g072490.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 84.73 | 85.06 |
| VIT_14s0030g01810.t01 | Wine grape | cytosol | 84.73 | 85.06 |
| KRH27653 | Soybean | endoplasmic reticulum | 84.73 | 85.06 |
| PGSC0003DMT400019867 | Potato | cytosol | 84.35 | 85.0 |
| Solyc03g097900.2.1 | Tomato | cytosol, nucleus, unclear | 84.35 | 84.67 |
| VIT_05s0020g03900.t01 | Wine grape | cytosol | 84.35 | 84.67 |
| Solyc09g082520.2.1 | Tomato | cytosol, nucleus | 83.97 | 84.62 |
| PGSC0003DMT400083968 | Potato | cytosol | 83.97 | 84.29 |
| TraesCS4A01G044700.1 | Wheat | cytosol, golgi, unclear | 83.97 | 83.65 |
| GSMUA_Achr3P30060_001 | Banana | cytosol | 83.21 | 83.52 |
| TraesCS4B01G260600.1 | Wheat | cytosol, nucleus, unclear | 83.59 | 83.27 |
| TraesCS4D01G260400.1 | Wheat | cytosol, golgi, nucleus, unclear | 83.59 | 83.27 |
| GSMUA_Achr6P24760_001 | Banana | cytosol | 82.06 | 82.69 |
| GSMUA_Achr1P22500_001 | Banana | cytosol | 82.06 | 82.38 |
| EER99659 | Sorghum | cytosol | 82.44 | 82.13 |
| Os03t0200500-01 | Rice | nucleus | 82.06 | 82.06 |
| GSMUA_Achr5P08700_001 | Banana | cytosol | 81.68 | 81.99 |
| Zm00001d048157_P001 | Maize | cytosol | 81.3 | 81.92 |
| Zm00001d048159_P001 | Maize | cytosol | 81.3 | 81.92 |
| KXG39941 | Sorghum | cytosol | 81.3 | 81.92 |
| EER99658 | Sorghum | cytosol | 82.06 | 81.75 |
| Zm00001d028117_P002 | Maize | cytosol | 80.92 | 81.54 |
| OQU92889 | Sorghum | cytosol | 73.66 | 80.75 |
| Os02t0287000-02 | Rice | cytosol, golgi, nucleus, plasma membrane | 82.82 | 79.78 |
| VIT_05s0094g00620.t01 | Wine grape | cytosol | 31.3 | 76.64 |
| Zm00001d006766_P001 | Maize | cytosol | 37.02 | 75.19 |
| HORVU4Hr1G070370.1 | Barley | cytosol, plastid | 82.82 | 75.09 |
| EER99660 | Sorghum | cytosol | 62.21 | 74.77 |
| KRH53243 | Soybean | cytosol, endoplasmic reticulum | 75.19 | 74.62 |
| HORVU1Hr1G032060.4 | Barley | cytosol | 79.77 | 72.32 |
| OQU90205 | Sorghum | mitochondrion | 73.66 | 67.25 |
| Zm00001d048158_P002 | Maize | plastid | 81.3 | 66.15 |
| HORVU6Hr1G080910.1 | Barley | cytosol | 22.14 | 65.17 |
| GSMUA_Achr8P31000_001 | Banana | cytosol | 15.65 | 65.08 |
| GSMUA_Achr4P16480_001 | Banana | cytosol | 7.63 | 62.5 |
| KRH37543 | Soybean | cytosol | 43.89 | 53.49 |
| GSMUA_Achr4P16490_001 | Banana | cytosol, mitochondrion | 42.75 | 40.73 |
Protein Annotations
| MapMan:17.1.3.1.4 | EntrezGene:829619 | UniProt:A0A178UZT1 | ProteinID:AEE86408.1 | EMBL:AJ001342 | ArrayExpress:AT4G34670 |
| EnsemblPlantsGene:AT4G34670 | RefSeq:AT4G34670 | TAIR:AT4G34670 | RefSeq:AT4G34670-TAIR-G | EnsemblPlants:AT4G34670.1 | TAIR:AT4G34670.1 |
| EMBL:AY062500 | Unigene:At.24 | ProteinID:CAA18846.1 | ProteinID:CAB80184.1 | GO:GO:0002181 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 | GO:GO:0030529 | GO:GO:0042788 | HAMAP:MF_03122 |
| RefSeq:NP_195193.1 | ProteinID:OAO98887.1 | PFAM:PF01015 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01191 | PANTHER:PTHR11830 | PANTHER:PTHR11830:SF12 |
| UniProt:Q42262 | InterPro:Ribosomal_S1/3_euk | InterPro:Ribosomal_S3Ae | InterPro:Ribosomal_S3Ae_CS | SMART:SM01397 | UniParc:UPI0000000E6D |
| EMBL:Z33754 | EMBL:Z35368 | SEG:seg | : | : | : |
Description
RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
Coordinates
chr4:+:16548600..16550549
Molecular Weight (calculated)
29805.2 Da
IEP (calculated)
10.404
GRAVY (calculated)
-0.564
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.