CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	CDY21807	AT3G48100.1	18642946
AT4G34670.1	CDY36905	AT3G48100.1	18642946
AT4G34670.1	CDY54257	AT3G48100.1	18642946
AT4G34670.1	CDY59856	AT3G48100.1	18642946
AT4G34670.1	CDY68129	AT3G48100.1	18642946
AT4G34670.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034643.1-P	Field mustard	cytosol	99.62	99.62
CDY17474	Canola	cytosol	92.72	98.78
CDX69078	Canola	cytosol, extracellular	95.02	94.66
CDX75453	Canola	cytosol	94.64	94.27
CDX72495	Canola	cytosol	93.87	93.87
CDY45324	Canola	cytosol, extracellular	93.87	93.87
CDY41904	Canola	cytosol	93.87	93.51
CDY50760	Canola	cytosol	93.87	93.51
AT4G34670.1	Thale cress	cytosol	93.87	93.51
CDX74165	Canola	cytosol	92.72	92.37
CDY40680	Canola	cytosol	92.72	92.37
KRH77835	Soybean	nucleus	86.59	86.59
KRH27653	Soybean	endoplasmic reticulum	86.21	86.21
KRG91350	Soybean	nucleus	86.21	86.21
KRH35477	Soybean	nucleus	85.82	85.82
PGSC0003DMT400019867	Potato	cytosol	85.44	85.77
Solyc09g082520.2.1	Tomato	cytosol, nucleus	85.06	85.38
EER99659	Sorghum	cytosol	84.29	83.65
PGSC0003DMT400069575	Potato	cytosol	83.52	83.52
VIT_14s0030g01810.t01	Wine grape	cytosol	83.52	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.52	83.52
EER99658	Sorghum	cytosol	83.91	83.27
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.14	83.14
VIT_05s0020g03900.t01	Wine grape	cytosol	83.14	83.14
Zm00001d048159_P001	Maize	cytosol	82.76	83.08
Zm00001d048157_P001	Maize	cytosol	82.76	83.08
PGSC0003DMT400083968	Potato	cytosol	82.76	82.76
GSMUA_Achr3P30060_001	Banana	cytosol	82.76	82.76
Zm00001d028117_P002	Maize	cytosol	82.38	82.69
KXG39941	Sorghum	cytosol	82.38	82.69
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	83.14	82.51
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	83.14	82.51
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	83.14	82.51
Os03t0200500-01	Rice	nucleus	82.76	82.44
GSMUA_Achr6P24760_001	Banana	cytosol	81.99	82.31
OQU92889	Sorghum	cytosol	75.1	82.01
GSMUA_Achr1P22500_001	Banana	cytosol	81.23	81.23
GSMUA_Achr5P08700_001	Banana	cytosol	80.46	80.46
CDY30019	Canola	plasma membrane	92.72	80.13
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.14	79.78
Zm00001d006766_P001	Maize	cytosol	37.93	76.74
VIT_05s0094g00620.t01	Wine grape	cytosol	31.42	76.64
EER99660	Sorghum	cytosol	63.6	76.15
KRH53243	Soybean	cytosol, endoplasmic reticulum	77.01	76.14
HORVU4Hr1G070370.1	Barley	cytosol, plastid	82.38	74.39
HORVU1Hr1G032060.4	Barley	cytosol	80.46	72.66
OQU90205	Sorghum	mitochondrion	75.48	68.64
CDY52999	Canola	cytosol	23.37	67.78
Zm00001d048158_P002	Maize	plastid	82.76	67.08
GSMUA_Achr8P31000_001	Banana	cytosol	16.09	66.67
HORVU6Hr1G080910.1	Barley	cytosol	22.22	65.17
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
KRH37543	Soybean	cytosol	44.06	53.49
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	42.91	40.73

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078CGG2	EnsemblPlants:CDX76296	ProteinID:CDX76296	ProteinID:CDX76296.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	EnsemblPlantsGene:GSBRNA2T00126663001	HAMAP:MF_03122	PFAM:PF01015
ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI0001BA92A5	SEG:seg	:	:	:

Description

BnaA08g11040D

Coordinates

chrLK031807:+:194470..196090

Molecular Weight (calculated)

29824.1 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.601

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKI VDPFSKKDWY DIKAPSNFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQSDEDHS YRKIRLRAED VQGRNVLTQF
101: WGMNFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRMFCI GFTKRRANQV KRTCYAQSSQ VRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGKEIEKA
201: TQNIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TAEEPTEIIG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.