CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040119.1-P	Field mustard	cytosol	85.76	99.23
CDY41904	Canola	cytosol	83.11	95.8
CDY50760	Canola	cytosol	83.11	95.8
CDY40680	Canola	cytosol	83.11	95.8
CDX74165	Canola	cytosol	82.78	95.42
CDX76296	Canola	cytosol	80.13	92.72
CDX72495	Canola	cytosol	80.13	92.72
CDY45324	Canola	cytosol, extracellular	80.13	92.72
CDY17474	Canola	cytosol	75.17	92.65
CDX75453	Canola	cytosol	80.13	92.37
CDX69078	Canola	cytosol, extracellular	79.8	91.98
AT3G04840.1	Thale cress	cytosol	79.14	91.22
KRG91350	Soybean	nucleus	74.17	85.82
VIT_05s0020g03900.t01	Wine grape	cytosol	73.84	85.44
KRH35477	Soybean	nucleus	73.84	85.44
KRH77835	Soybean	nucleus	72.85	84.29
KRH27653	Soybean	endoplasmic reticulum	72.52	83.91
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	72.52	83.91
PGSC0003DMT400069575	Potato	cytosol	72.52	83.91
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	72.19	83.52
GSMUA_Achr3P30060_001	Banana	cytosol	72.19	83.52
VIT_14s0030g01810.t01	Wine grape	cytosol	72.19	83.52
PGSC0003DMT400019867	Potato	cytosol	71.85	83.46
PGSC0003DMT400083968	Potato	cytosol	71.85	83.14
Zm00001d048159_P001	Maize	cytosol	71.52	83.08
Zm00001d048157_P001	Maize	cytosol	71.52	83.08
EER99659	Sorghum	cytosol	72.19	82.89
GSMUA_Achr1P22500_001	Banana	cytosol	71.52	82.76
Zm00001d028117_P002	Maize	cytosol	71.19	82.69
Solyc09g082520.2.1	Tomato	cytosol, nucleus	71.19	82.69
KXG39941	Sorghum	cytosol	71.19	82.69
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	71.85	82.51
EER99658	Sorghum	cytosol	71.85	82.51
GSMUA_Achr6P24760_001	Banana	cytosol	70.86	82.31
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	71.52	82.13
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	71.52	82.13
Os03t0200500-01	Rice	nucleus	70.86	81.68
GSMUA_Achr5P08700_001	Banana	cytosol	70.2	81.23
OQU92889	Sorghum	cytosol	64.24	81.17
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	71.52	79.41
EER99660	Sorghum	cytosol	54.97	76.15
Zm00001d006766_P001	Maize	cytosol	32.45	75.97
VIT_05s0094g00620.t01	Wine grape	cytosol	26.82	75.7
HORVU4Hr1G070370.1	Barley	cytosol, plastid	71.52	74.74
CDY52999	Canola	cytosol	21.85	73.33
KRH53243	Soybean	cytosol, endoplasmic reticulum	63.91	73.11
HORVU1Hr1G032060.4	Barley	cytosol	69.87	73.01
OQU90205	Sorghum	mitochondrion	65.23	68.64
Zm00001d048158_P002	Maize	plastid	72.19	67.7
HORVU6Hr1G080910.1	Barley	cytosol	19.54	66.29
GSMUA_Achr4P16480_001	Banana	cytosol	6.95	65.62
GSMUA_Achr8P31000_001	Banana	cytosol	13.58	65.08
KRH37543	Soybean	cytosol	38.41	53.95
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	38.74	42.55

Protein Annotations

MapMan:17.1.3.1.4	GO:A0A078GY47	UniProt:A0A078GY47	EnsemblPlants:CDY30019	ProteinID:CDY30019	ProteinID:CDY30019.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00044554001
HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S1/3_euk
InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI0004EE457C	SEG:seg	:

Description

BnaC01g39890D40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A078GY47]

Coordinates

chrLK032247:+:466340..468034

Molecular Weight (calculated)

34318.8 Da

IEP (calculated)

10.492

GRAVY (calculated)

-0.421

Length

302 amino acids

Sequence
(BLAST)

001: MFSKAQNILF VSKLKTLSAV TLGLYLICFS SAHRPHSLSS TMAVGKNKRI SKGRKGGKKK IVDPFSKKDW YDIKAPSSFT HRNVGKTLVS RTQGTKIASE
101: GLKHRVFEVS LADLNKDEDQ AYRKIRLRAE DVQGRNVLTQ FWGMDFTTDK LRSLVKKWQT LIESHVDVKT TDNYTLRLFC IAFTKRRANQ VKRTCYAQSS
201: QIRQIRSKMR EIMIKEASSC DLKELVAKFI PESIGKDIEK ATQGIYPLQN VFIRKVKILK APKFDLGKLM EVHGDYTAED VGVKVDRPAD EVVEEPTEII
301: GA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.