Factsheet for GSMUA_Achr6P24760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08700_001	Banana	cytosol	93.08	92.72
GSMUA_Achr3P30060_001	Banana	cytosol	92.69	92.34
GSMUA_Achr1P22500_001	Banana	cytosol	91.54	91.19
KRH27653	Soybean	endoplasmic reticulum	88.08	87.74
KRH77835	Soybean	nucleus	87.69	87.36
KRH35477	Soybean	nucleus	87.31	86.97
KRG91350	Soybean	nucleus	86.92	86.59
Os03t0200500-01	Rice	nucleus	86.92	86.26
PGSC0003DMT400019867	Potato	cytosol	86.15	86.15
Zm00001d048159_P001	Maize	cytosol	85.77	85.77
KXG39941	Sorghum	cytosol	85.77	85.77
EER99659	Sorghum	cytosol	86.54	85.55
Solyc09g082520.2.1	Tomato	cytosol, nucleus	85.38	85.38
Zm00001d048157_P001	Maize	cytosol	85.38	85.38
EER99658	Sorghum	cytosol	86.15	85.17
Zm00001d028117_P002	Maize	cytosol	85.0	85.0
GSMUA_Achr4P16480_001	Banana	cytosol	10.38	84.38
OQU92889	Sorghum	cytosol	77.31	84.1
VIT_14s0030g01810.t01	Wine grape	cytosol	84.23	83.91
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	84.62	83.65
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	84.62	83.65
VIT_05s0020g03900.t01	Wine grape	cytosol	83.85	83.52
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	84.23	83.27
PGSC0003DMT400069575	Potato	cytosol	83.08	82.76
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.08	82.76
Bra040119.1-P	Field mustard	cytosol	82.69	82.38
PGSC0003DMT400083968	Potato	cytosol	82.69	82.38
AT4G34670.1	Thale cress	cytosol	82.69	82.06
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	82.31	81.99
CDX76296	Canola	cytosol	82.31	81.99
AT3G04840.1	Thale cress	cytosol	82.31	81.68
CDY50760	Canola	cytosol	82.31	81.68
CDY41904	Canola	cytosol	82.31	81.68
Bra034643.1-P	Field mustard	cytosol	81.92	81.61
Bra001127.1-P	Field mustard	cytosol	81.92	81.3
Bra040409.1-P	Field mustard	cytosol	81.92	81.3
CDX69078	Canola	cytosol, extracellular	81.92	81.3
CDX75453	Canola	cytosol	81.92	81.3
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	85.0	81.25
Bra017669.1-P	Field mustard	cytosol	81.54	81.23
CDX72495	Canola	cytosol	81.54	81.23
CDY45324	Canola	cytosol, extracellular	81.54	81.23
CDY17474	Canola	cytosol	76.54	81.22
CDY40680	Canola	cytosol	81.54	80.92
CDX74165	Canola	cytosol	81.54	80.92
Bra011551.1-P	Field mustard	cytosol	81.54	80.92
VIT_05s0094g00620.t01	Wine grape	cytosol	32.31	78.5
Zm00001d006766_P001	Maize	cytosol	38.08	76.74
GSMUA_Achr8P31000_001	Banana	cytosol	18.46	76.19
EER99660	Sorghum	cytosol	63.85	76.15
HORVU4Hr1G070370.1	Barley	cytosol, plastid	84.23	75.78
HORVU1Hr1G032060.4	Barley	cytosol	83.46	75.09
KRH53243	Soybean	cytosol, endoplasmic reticulum	75.0	73.86
CDY30019	Canola	plasma membrane	82.31	70.86
Zm00001d048158_P002	Maize	plastid	85.77	69.25
OQU90205	Sorghum	mitochondrion	76.15	68.99
HORVU6Hr1G080910.1	Barley	cytosol	21.54	62.92
KRH37543	Soybean	cytosol	45.77	55.35
Bra026324.1-P	Field mustard	cytosol	18.46	53.33
CDY52999	Canola	cytosol	18.46	53.33
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	48.85	46.18

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr6G24760_001	EnsemblPlants:GSMUA_Achr6P24760_001	EnsemblPlants:GSMUA_Achr6T24760_001	UniProt:M0T9X2	HAMAP:MF_03122	PFAM:PF01015
ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI00029588D9	SEG:seg	:	:	:

Description

40S ribosomal protein S3a [Source:GMGC_GENE;Acc:GSMUA_Achr6G24760_001]

Coordinates

chr6:-:25599115..25602603

Molecular Weight (calculated)

29742.2 Da

IEP (calculated)

10.477

GRAVY (calculated)

-0.607

Length

260 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA VDPFAKKDWY DIKAPSVFNV RNIGKTLVSR TQGTKIASEG LKHRVFEVCL ADLQNDEDQA HRKIRLRAED VQGKNVLANF
101: WGMDLTTDKV RYVVRKWQTL IEAHVDVKTT DNYTLRMFCI GFTKRRPNQV KRTCYAQSSQ IRQIRRKMRE IMVNQATTGD LKDLVQKFIP EVIGKEIEKA
201: TTSIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYKEDVG AKVDRPAEDV QMEGEEVTGA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.