CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	KRH03376	AT3G48100.1	18642946
AT4G34670.1	KRH54462	AT3G48100.1	18642946
AT4G34670.1	KRH57009	AT3G48100.1	18642946
AT4G34670.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77835	Soybean	nucleus	84.47	85.44
KRH27653	Soybean	endoplasmic reticulum	83.33	84.29
KRG91350	Soybean	nucleus	81.82	82.76
KRH35477	Soybean	nucleus	81.82	82.76
PGSC0003DMT400019867	Potato	cytosol	76.14	77.31
CDX76296	Canola	cytosol	76.14	77.01
Solyc09g082520.2.1	Tomato	cytosol, nucleus	75.76	76.92
Bra034643.1-P	Field mustard	cytosol	75.76	76.63
VIT_05s0020g03900.t01	Wine grape	cytosol	75.76	76.63
CDY17474	Canola	cytosol	70.45	75.92
GSMUA_Achr3P30060_001	Banana	cytosol	75.0	75.86
AT4G34670.1	Thale cress	cytosol	74.62	75.19
CDY50760	Canola	cytosol	74.62	75.19
CDY41904	Canola	cytosol	74.62	75.19
CDX69078	Canola	cytosol, extracellular	74.62	75.19
CDX75453	Canola	cytosol	74.62	75.19
GSMUA_Achr6P24760_001	Banana	cytosol	73.86	75.0
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	74.62	74.9
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	74.62	74.9
Bra040409.1-P	Field mustard	cytosol	74.24	74.81
Bra011551.1-P	Field mustard	cytosol	74.24	74.81
CDY45324	Canola	cytosol, extracellular	73.86	74.71
CDX72495	Canola	cytosol	73.86	74.71
GSMUA_Achr5P08700_001	Banana	cytosol	73.86	74.71
GSMUA_Achr1P22500_001	Banana	cytosol	73.86	74.71
Bra017669.1-P	Field mustard	cytosol	73.86	74.71
KXG39941	Sorghum	cytosol	73.48	74.62
Zm00001d028117_P002	Maize	cytosol	73.48	74.62
EER99659	Sorghum	cytosol	74.24	74.52
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	74.24	74.52
Zm00001d048157_P001	Maize	cytosol	73.11	74.23
Zm00001d048159_P001	Maize	cytosol	73.11	74.23
EER99658	Sorghum	cytosol	73.86	74.14
OQU92889	Sorghum	cytosol	67.05	74.06
Bra001127.1-P	Field mustard	cytosol	73.48	74.05
CDX74165	Canola	cytosol	73.48	74.05
CDY40680	Canola	cytosol	73.48	74.05
Os03t0200500-01	Rice	nucleus	73.11	73.66
Bra040119.1-P	Field mustard	cytosol	72.73	73.56
AT3G04840.1	Thale cress	cytosol	72.73	73.28
GSMUA_Achr8P31000_001	Banana	cytosol	17.05	71.43
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	73.11	70.96
HORVU4Hr1G070370.1	Barley	cytosol, plastid	74.24	67.82
EER99660	Sorghum	cytosol	54.55	66.06
HORVU1Hr1G032060.4	Barley	cytosol	71.97	65.74
CDY30019	Canola	plasma membrane	73.11	63.91
OQU90205	Sorghum	mitochondrion	67.8	62.37
Zm00001d006766_P001	Maize	cytosol	30.3	62.02
Zm00001d048158_P002	Maize	plastid	73.11	59.94
GSMUA_Achr4P16480_001	Banana	cytosol	7.2	59.38
HORVU6Hr1G080910.1	Barley	cytosol	19.7	58.43
KRH37543	Soybean	cytosol	46.97	57.67
CDY52999	Canola	cytosol	18.18	53.33
Bra026324.1-P	Field mustard	cytosol	18.18	53.33
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	39.39	37.82

Protein Annotations

MapMan:17.1.3.1.4	EMBL:ACUP02003455	EnsemblPlantsGene:GLYMA_06G113700	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1KAA3	EnsemblPlants:KRH53243	ProteinID:KRH53243
ProteinID:KRH53243.1	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000296D2DB	:

Description

hypothetical protein

Coordinates

chr6:-:9224913..9227217

Molecular Weight (calculated)

30290.6 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.530

Length

264 amino acids

Sequence
(BLAST)

001: YCCESIEELW PSERTRGFLR PRSADPFTKK DWYDIKAPSV FQVKNVGKTL VTRTQGTKTA SDGLKHRVFE VSLADLQGDE DHAFKKIRLR AEDVQGKNVL
101: TNFWGMSFTT DKLRSLVRKW QTLIEAHADV KTTDNYTLRM FCIGFTKRRS NQVKRTCYAQ SSQVKQIRRK MTEIMVNQTT SCDLKEVVRK LIPEMIGKEI
201: EKATSSIYPL QNVFIRKVKI LKAPKFDLGK LMEIHGDYSE DVGVKVDRPV DETMPEGATE VVGA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.