Factsheet for TraesCS4B01G260600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	99.62	99.62
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	99.62	99.62
HORVU4Hr1G070370.1	Barley	cytosol, plastid	98.86	89.97
GSMUA_Achr3P30060_001	Banana	cytosol	85.55	86.21
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	88.97	86.03
GSMUA_Achr1P22500_001	Banana	cytosol	84.79	85.44
GSMUA_Achr5P08700_001	Banana	cytosol	84.79	85.44
KRG91350	Soybean	nucleus	84.79	85.44
PGSC0003DMT400069575	Potato	cytosol	84.41	85.06
KRH77835	Soybean	nucleus	84.41	85.06
KRH35477	Soybean	nucleus	84.03	84.67
KRH27653	Soybean	endoplasmic reticulum	84.03	84.67
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	84.03	84.67
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	84.03	84.67
GSMUA_Achr6P24760_001	Banana	cytosol	83.65	84.62
PGSC0003DMT400083968	Potato	cytosol	83.65	84.29
VIT_05s0020g03900.t01	Wine grape	cytosol	83.65	84.29
AT4G34670.1	Thale cress	cytosol	83.27	83.59
VIT_14s0030g01810.t01	Wine grape	cytosol	82.89	83.52
CDX76296	Canola	cytosol	82.51	83.14
Bra034643.1-P	Field mustard	cytosol	82.13	82.76
PGSC0003DMT400019867	Potato	cytosol	81.75	82.69
CDY17474	Canola	cytosol	76.81	82.45
Bra040119.1-P	Field mustard	cytosol	81.75	82.38
Solyc09g082520.2.1	Tomato	cytosol, nucleus	81.37	82.31
Bra001127.1-P	Field mustard	cytosol	81.75	82.06
CDX69078	Canola	cytosol, extracellular	81.75	82.06
CDX75453	Canola	cytosol	81.75	82.06
CDX74165	Canola	cytosol	81.37	81.68
Bra011551.1-P	Field mustard	cytosol	81.37	81.68
CDY50760	Canola	cytosol	81.37	81.68
CDY40680	Canola	cytosol	81.37	81.68
CDY41904	Canola	cytosol	81.37	81.68
CDX72495	Canola	cytosol	80.99	81.61
CDY45324	Canola	cytosol, extracellular	80.99	81.61
Bra017669.1-P	Field mustard	cytosol	80.99	81.61
Bra040409.1-P	Field mustard	cytosol	80.99	81.3
AT3G04840.1	Thale cress	cytosol	80.99	81.3
VIT_05s0094g00620.t01	Wine grape	cytosol	30.42	74.77
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.9	74.62
HORVU6Hr1G080910.1	Barley	cytosol	24.71	73.03
GSMUA_Achr8P31000_001	Banana	cytosol	17.49	73.02
CDY30019	Canola	plasma membrane	82.13	71.52
GSMUA_Achr4P16480_001	Banana	cytosol	7.98	65.62
KRH37543	Soybean	cytosol	46.39	56.74
Bra026324.1-P	Field mustard	cytosol	18.25	53.33
CDY52999	Canola	cytosol	18.25	53.33
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	42.97	41.09

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191
PANTHER:PTHR11830	PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397
EnsemblPlantsGene:TraesCS4B01G260600	EnsemblPlants:TraesCS4B01G260600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:527297403..527299191

Molecular Weight (calculated)

29992.6 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.501

Length

263 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGSKKKA VDPFTKKQWY DIKAPLLFTS RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDQA YRKIRLRAED VQGMNVLTNF
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYMLRMFAI GFTKRRPNQV KRTCYAQASQ IRQIRRKMVE IMVNQAASCD LKELVNKFIP EVIGKEIEKA
201: TSSIFPLQNV YVRKVKILKA PKFDLGKLME VHGDYKEDVG VKLDRPADGD EVIPGAEEVA AAE

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.