Factsheet for VIT_05s0094g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G080910.1	Barley	cytosol	49.53	59.55
Zm00001d006766_P001	Maize	cytosol	68.22	56.59
EER99660	Sorghum	cytosol	76.64	37.61
VIT_14s0030g01810.t01	Wine grape	cytosol	86.92	35.63
CDY17474	Canola	cytosol	77.57	33.88
VIT_05s0020g03900.t01	Wine grape	cytosol	82.24	33.72
GSMUA_Achr3P30060_001	Banana	cytosol	81.31	33.33
GSMUA_Achr5P08700_001	Banana	cytosol	79.44	32.57
Os03t0200500-01	Rice	nucleus	79.44	32.44
GSMUA_Achr6P24760_001	Banana	cytosol	78.5	32.31
CDX72495	Canola	cytosol	77.57	31.8
GSMUA_Achr1P22500_001	Banana	cytosol	77.57	31.8
Bra017669.1-P	Field mustard	cytosol	77.57	31.8
CDY45324	Canola	cytosol, extracellular	77.57	31.8
PGSC0003DMT400069575	Potato	cytosol	77.57	31.8
CDY50760	Canola	cytosol	77.57	31.68
AT3G04840.1	Thale cress	cytosol	77.57	31.68
CDY41904	Canola	cytosol	77.57	31.68
Bra040409.1-P	Field mustard	cytosol	77.57	31.68
EER99659	Sorghum	cytosol	77.57	31.56
KXG39941	Sorghum	cytosol	76.64	31.54
Zm00001d048157_P001	Maize	cytosol	76.64	31.54
Zm00001d048159_P001	Maize	cytosol	76.64	31.54
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	76.64	31.42
CDX76296	Canola	cytosol	76.64	31.42
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	76.64	31.42
Bra040119.1-P	Field mustard	cytosol	76.64	31.42
Bra034643.1-P	Field mustard	cytosol	76.64	31.42
OQU92889	Sorghum	cytosol	70.09	31.38
AT4G34670.1	Thale cress	cytosol	76.64	31.3
Bra001127.1-P	Field mustard	cytosol	76.64	31.3
Bra011551.1-P	Field mustard	cytosol	76.64	31.3
CDX69078	Canola	cytosol, extracellular	76.64	31.3
CDY40680	Canola	cytosol	76.64	31.3
CDX74165	Canola	cytosol	76.64	31.3
CDX75453	Canola	cytosol	76.64	31.3
EER99658	Sorghum	cytosol	76.64	31.18
Zm00001d028117_P002	Maize	cytosol	75.7	31.15
PGSC0003DMT400083968	Potato	cytosol	75.7	31.03
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	74.77	30.42
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	74.77	30.42
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	74.77	30.42
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	75.7	29.78
HORVU4Hr1G070370.1	Barley	cytosol, plastid	74.77	27.68
OQU90205	Sorghum	mitochondrion	73.83	27.53
HORVU1Hr1G032060.4	Barley	cytosol	73.83	27.34
CDY30019	Canola	plasma membrane	75.7	26.82
Zm00001d048158_P002	Maize	plastid	76.64	25.47
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	49.53	19.27
CDY52999	Canola	cytosol	0.0	0.0
Bra026324.1-P	Field mustard	cytosol	0.0	0.0
GSMUA_Achr4P16480_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P31000_001	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB49387	ProteinID:CCB49387.1	UniProt:F6HB17	EMBL:FN595507	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	PFAM:PF01015	ScanProsite:PS01191
PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI00019834BE
ArrayExpress:VIT_05s0094g00620	EnsemblPlantsGene:VIT_05s0094g00620	EnsemblPlants:VIT_05s0094g00620.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:23960216..23960544

Molecular Weight (calculated)

12361.9 Da

IEP (calculated)

10.864

GRAVY (calculated)

-0.853

Length

107 amino acids

Sequence
(BLAST)

001: MVVGKNKRIS KGKKGGKKKA ADPFAKKDWY DIKAPSIFSV RNVSKTLVSR TLGTKIASEG LKHRVFEISL ADIQNDEDHA YRKIRLRAED VQGKTHKHLW
101: NDWRWCQ

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.