Factsheet for Bra026324.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52999	Canola	cytosol	100.0	100.0
GSMUA_Achr4P16480_001	Banana	cytosol	16.67	46.88
GSMUA_Achr8P31000_001	Banana	cytosol	26.67	38.1
Bra040119.1-P	Field mustard	cytosol	72.22	24.9
Bra040409.1-P	Field mustard	cytosol	72.22	24.81
Bra001127.1-P	Field mustard	cytosol	71.11	24.43
Bra017669.1-P	Field mustard	cytosol	68.89	23.75
Bra011551.1-P	Field mustard	cytosol	68.89	23.66
Bra034643.1-P	Field mustard	cytosol	66.67	22.99
AT3G04840.1	Thale cress	cytosol	65.56	22.52
KRG91350	Soybean	nucleus	60.0	20.69
PGSC0003DMT400019867	Potato	cytosol	58.89	20.38
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	58.89	20.31
KRH35477	Soybean	nucleus	58.89	20.31
Solyc09g082520.2.1	Tomato	cytosol, nucleus	57.78	20.0
PGSC0003DMT400069575	Potato	cytosol	57.78	19.92
KRH27653	Soybean	endoplasmic reticulum	57.78	19.92
PGSC0003DMT400083968	Potato	cytosol	57.78	19.92
KRH77835	Soybean	nucleus	57.78	19.92
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	56.67	19.54
OQU92889	Sorghum	cytosol	51.11	19.25
GSMUA_Achr3P30060_001	Banana	cytosol	55.56	19.16
VIT_14s0030g01810.t01	Wine grape	cytosol	55.56	19.16
VIT_05s0020g03900.t01	Wine grape	cytosol	55.56	19.16
GSMUA_Achr1P22500_001	Banana	cytosol	54.44	18.77
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	54.44	18.63
GSMUA_Achr6P24760_001	Banana	cytosol	53.33	18.46
GSMUA_Achr5P08700_001	Banana	cytosol	53.33	18.39
Os03t0200500-01	Rice	nucleus	53.33	18.32
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	53.33	18.25
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	53.33	18.25
EER99659	Sorghum	cytosol	53.33	18.25
EER99658	Sorghum	cytosol	53.33	18.25
KRH53243	Soybean	cytosol, endoplasmic reticulum	53.33	18.18
Zm00001d048157_P001	Maize	cytosol	52.22	18.08
Zm00001d028117_P002	Maize	cytosol	52.22	18.08
Zm00001d048159_P001	Maize	cytosol	52.22	18.08
KXG39941	Sorghum	cytosol	51.11	17.69
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	52.22	17.28
KRH37543	Soybean	cytosol	41.11	17.21
HORVU4Hr1G070370.1	Barley	cytosol, plastid	52.22	16.26
OQU90205	Sorghum	mitochondrion	51.11	16.03
HORVU1Hr1G032060.4	Barley	cytosol	48.89	15.22
Zm00001d048158_P002	Maize	plastid	52.22	14.6
Zm00001d006766_P001	Maize	cytosol	17.78	12.4
EER99660	Sorghum	cytosol	20.0	8.26
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	2.22	0.73
HORVU6Hr1G080910.1	Barley	cytosol	0.0	0.0
VIT_05s0094g00620.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra026324.1	EnsemblPlants:Bra026324.1-P	EnsemblPlantsGene:Bra026324	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	UniParc:UPI0002545919
UniProt:M4EC15	MapMan:35.1	:	:	:	:

Description

AT4G34670 (E=1e-026) | 40S ribosomal protein S3A (RPS3aB)

Coordinates

chrA01:-:10004758..10005137

Molecular Weight (calculated)

9849.8 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.348

Length

90 amino acids

Sequence
(BLAST)

1: MREIMIKEAS SCDLKELVAK FIPESIGKDI EKANSGHLPS SECFHPLSQD PKFDLGKKLK EALHGDYTAV DVGVKVDRPA VEEPTEIIGA

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.