Factsheet for PGSC0003DMT400069575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	99.23	99.23
PGSC0003DMT400083968	Potato	cytosol	99.23	99.23
PGSC0003DMT400019867	Potato	cytosol	89.27	89.62
VIT_14s0030g01810.t01	Wine grape	cytosol	88.51	88.51
GSMUA_Achr3P30060_001	Banana	cytosol	86.21	86.21
Bra017669.1-P	Field mustard	cytosol	85.44	85.44
CDX72495	Canola	cytosol	85.44	85.44
CDY45324	Canola	cytosol, extracellular	85.44	85.44
GSMUA_Achr5P08700_001	Banana	cytosol	85.06	85.06
AT4G34670.1	Thale cress	cytosol	85.06	84.73
Os03t0200500-01	Rice	nucleus	85.06	84.73
GSMUA_Achr1P22500_001	Banana	cytosol	84.67	84.67
Zm00001d048159_P001	Maize	cytosol	84.29	84.62
Zm00001d048157_P001	Maize	cytosol	84.29	84.62
KXG39941	Sorghum	cytosol	84.29	84.62
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	85.06	84.41
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	85.06	84.41
CDX75453	Canola	cytosol	84.67	84.35
Zm00001d028117_P002	Maize	cytosol	83.91	84.23
OQU92889	Sorghum	cytosol	77.01	84.1
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	84.67	84.03
CDX69078	Canola	cytosol, extracellular	84.29	83.97
Bra001127.1-P	Field mustard	cytosol	84.29	83.97
Bra011551.1-P	Field mustard	cytosol	84.29	83.97
Bra040119.1-P	Field mustard	cytosol	83.91	83.91
EER99659	Sorghum	cytosol	84.29	83.65
CDY41904	Canola	cytosol	83.91	83.59
CDY50760	Canola	cytosol	83.91	83.59
CDX76296	Canola	cytosol	83.52	83.52
EER99658	Sorghum	cytosol	83.91	83.27
CDY40680	Canola	cytosol	83.52	83.21
Bra040409.1-P	Field mustard	cytosol	83.52	83.21
AT3G04840.1	Thale cress	cytosol	83.52	83.21
CDX74165	Canola	cytosol	83.52	83.21
Bra034643.1-P	Field mustard	cytosol	83.14	83.14
GSMUA_Achr6P24760_001	Banana	cytosol	82.76	83.08
CDY17474	Canola	cytosol	77.78	82.86
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	83.52	80.15
VIT_05s0094g00620.t01	Wine grape	cytosol	31.8	77.57
HORVU4Hr1G070370.1	Barley	cytosol, plastid	84.67	76.47
Zm00001d006766_P001	Maize	cytosol	37.16	75.19
HORVU1Hr1G032060.4	Barley	cytosol	83.14	75.09
EER99660	Sorghum	cytosol	62.45	74.77
GSMUA_Achr8P31000_001	Banana	cytosol	17.62	73.02
CDY30019	Canola	plasma membrane	83.91	72.52
OQU90205	Sorghum	mitochondrion	76.25	69.34
Zm00001d048158_P002	Maize	plastid	84.29	68.32
GSMUA_Achr4P16480_001	Banana	cytosol	7.66	62.5
HORVU6Hr1G080910.1	Barley	cytosol	20.69	60.67
Bra026324.1-P	Field mustard	cytosol	19.92	57.78
CDY52999	Canola	cytosol	19.92	57.78
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.68	41.45

Protein Annotations

EntrezGene:102590512	MapMan:17.1.3.1.4	ProteinID:ABB55367	ProteinID:ABB55367.1	ProteinID:ABB72794	ProteinID:ABB72794.1
ProteinID:ABB87133	ProteinID:ABB87133.1	EMBL:DQ241862	EMBL:DQ252490	EMBL:DQ268835	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03122	RefSeq:NP_001274913.1
PFAM:PF01015	EnsemblPlantsGene:PGSC0003DMG400027045	PGSC:PGSC0003DMG400027045	EnsemblPlants:PGSC0003DMT400069575	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF12	UniProt:Q2XPX9	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397
UniParc:UPI00005E478C	SEG:seg	:	:	:	:

Description

Cyc07 [Source:PGSC_GENE;Acc:PGSC0003DMG400027045]

Coordinates

chr6:+:53263579..53266431

Molecular Weight (calculated)

29724.0 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.617

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFEI KNVGKTLVTR TQGTKIASEG LKHRVFEVSL ADLQKDEDQA YRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DSYTLRMFCI AFTKKRPNQQ KRTCYAQSSQ IRQIRRKMVE IMRNQASSCD LKELVAKFIP ESIGREIEKA
201: TSSIFPLQNV YIRKVKILKA PKFDLGKLME VHGDYSEDVG VKLDRPAEET VAEAEAEVPG A

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.