Factsheet for Os02t0287000-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0200500-01	Rice	nucleus	90.07	93.51
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	86.03	88.97
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	86.03	88.97
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	85.66	88.59
GSMUA_Achr1P22500_001	Banana	cytosol	83.09	86.59
GSMUA_Achr3P30060_001	Banana	cytosol	82.35	85.82
GSMUA_Achr6P24760_001	Banana	cytosol	81.25	85.0
GSMUA_Achr5P08700_001	Banana	cytosol	80.88	84.29
KRH77835	Soybean	nucleus	80.15	83.52
PGSC0003DMT400069575	Potato	cytosol	80.15	83.52
KRH27653	Soybean	endoplasmic reticulum	80.15	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	79.78	83.14
CDX76296	Canola	cytosol	79.78	83.14
PGSC0003DMT400019867	Potato	cytosol	79.41	83.08
HORVU1Hr1G032060.4	Barley	cytosol	88.24	83.05
AT4G34670.1	Thale cress	cytosol	79.78	82.82
CDY50760	Canola	cytosol	79.78	82.82
CDY41904	Canola	cytosol	79.78	82.82
PGSC0003DMT400083968	Potato	cytosol	79.41	82.76
KRH35477	Soybean	nucleus	79.41	82.76
VIT_05s0020g03900.t01	Wine grape	cytosol	79.41	82.76
Bra034643.1-P	Field mustard	cytosol	79.41	82.76
Solyc09g082520.2.1	Tomato	cytosol, nucleus	79.04	82.69
Bra001127.1-P	Field mustard	cytosol	79.41	82.44
CDX75453	Canola	cytosol	79.41	82.44
CDX69078	Canola	cytosol, extracellular	79.41	82.44
Bra040409.1-P	Field mustard	cytosol	79.41	82.44
CDY45324	Canola	cytosol, extracellular	79.04	82.38
Bra017669.1-P	Field mustard	cytosol	79.04	82.38
KRG91350	Soybean	nucleus	79.04	82.38
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	79.04	82.38
CDX72495	Canola	cytosol	79.04	82.38
CDX74165	Canola	cytosol	79.04	82.06
Bra011551.1-P	Field mustard	cytosol	79.04	82.06
CDY40680	Canola	cytosol	79.04	82.06
CDY17474	Canola	cytosol	73.9	82.04
VIT_14s0030g01810.t01	Wine grape	cytosol	78.68	81.99
Bra040119.1-P	Field mustard	cytosol	78.68	81.99
AT3G04840.1	Thale cress	cytosol	78.68	81.68
VIT_05s0094g00620.t01	Wine grape	cytosol	29.78	75.7
KRH53243	Soybean	cytosol, endoplasmic reticulum	70.96	73.11
GSMUA_Achr8P31000_001	Banana	cytosol	16.91	73.02
CDY30019	Canola	plasma membrane	79.41	71.52
GSMUA_Achr4P16480_001	Banana	cytosol	7.35	62.5
KRH37543	Soybean	cytosol	43.38	54.88
CDY52999	Canola	cytosol	17.28	52.22
Bra026324.1-P	Field mustard	cytosol	17.28	52.22
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	42.28	41.82

Protein Annotations

MapMan:17.1.3.1.4	EntrezGene:4329042	UniProt:A0A0P0VHP9	ProteinID:BAS78159.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
HAMAP:MF_03122	EnsemblPlantsGene:Os02g0287000	EnsemblPlants:Os02t0287000-02	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000393988B
SEG:seg	:	:	:	:	:

Description

Similar to 40S ribosomal protein S3a (CYC07 protein). (Os02t0287000-01);Ribosomal protein S3Ae domain containing protein. (Os02t0287000-02)

Coordinates

chr2:-:10822715..10825627

Molecular Weight (calculated)

30683.2 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.538

Length

272 amino acids

Sequence
(BLAST)

001: NPNPGGEGGA AMAVGKNKRI SKGRKGSKKK TVDPFSKKDW YDIKAPTVFS VRNIGKTLVS RTQGTKIASE GLKHRVFEVS LADLQNDEDQ AYRKVRLRAE
101: DVQGRNVLTN FWGMSFTTDK LRSLVKKWQT LIEAHVDVKT TDNYMLRLFC IGFTKRRPNQ VKRTCYAQAS QIRQIRRKMV EIMANQASTC DLKELVSKFI
201: PEVIGKEIEK STSSIFPLQN VFIRKVKILK APKFDLGKLM EVHGDYKEDV GMKLDRPAET DEAVAGEVAA AE

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.