Factsheet for Os03t0200500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39941	Sorghum	cytosol	93.13	93.85
EER99659	Sorghum	cytosol	93.89	93.54
EER99658	Sorghum	cytosol	93.51	93.16
Zm00001d048159_P001	Maize	cytosol	92.37	93.08
Zm00001d048157_P001	Maize	cytosol	91.98	92.69
Zm00001d028117_P002	Maize	cytosol	91.6	92.31
OQU92889	Sorghum	cytosol	83.97	92.05
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	93.51	90.07
GSMUA_Achr3P30060_001	Banana	cytosol	87.79	88.12
GSMUA_Achr1P22500_001	Banana	cytosol	87.02	87.36
GSMUA_Achr6P24760_001	Banana	cytosol	86.26	86.92
GSMUA_Achr5P08700_001	Banana	cytosol	85.5	85.82
PGSC0003DMT400069575	Potato	cytosol	84.73	85.06
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	84.35	84.67
KRG91350	Soybean	nucleus	84.35	84.67
KRH35477	Soybean	nucleus	84.35	84.67
KRH77835	Soybean	nucleus	83.97	84.29
KRH27653	Soybean	endoplasmic reticulum	83.97	84.29
PGSC0003DMT400083968	Potato	cytosol	83.97	84.29
PGSC0003DMT400019867	Potato	cytosol	83.59	84.23
VIT_05s0020g03900.t01	Wine grape	cytosol	83.59	83.91
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	83.59	83.91
Solyc09g082520.2.1	Tomato	cytosol, nucleus	83.21	83.85
VIT_14s0030g01810.t01	Wine grape	cytosol	82.82	83.14
CDX76296	Canola	cytosol	82.44	82.76
CDY41904	Canola	cytosol	82.44	82.44
CDY50760	Canola	cytosol	82.44	82.44
Bra034643.1-P	Field mustard	cytosol	82.06	82.38
EER99660	Sorghum	cytosol	68.32	82.11
AT4G34670.1	Thale cress	cytosol	82.06	82.06
Bra011551.1-P	Field mustard	cytosol	82.06	82.06
Bra040409.1-P	Field mustard	cytosol	82.06	82.06
CDX69078	Canola	cytosol, extracellular	82.06	82.06
CDX75453	Canola	cytosol	82.06	82.06
Bra017669.1-P	Field mustard	cytosol	81.68	81.99
CDY45324	Canola	cytosol, extracellular	81.68	81.99
Bra040119.1-P	Field mustard	cytosol	81.68	81.99
CDX72495	Canola	cytosol	81.68	81.99
CDY17474	Canola	cytosol	76.34	81.63
Zm00001d006766_P001	Maize	cytosol	40.08	81.4
Bra001127.1-P	Field mustard	cytosol	81.3	81.3
CDX74165	Canola	cytosol	80.92	80.92
AT3G04840.1	Thale cress	cytosol	80.92	80.92
CDY40680	Canola	cytosol	80.92	80.92
VIT_05s0094g00620.t01	Wine grape	cytosol	32.44	79.44
OQU90205	Sorghum	mitochondrion	82.82	75.61
Zm00001d048158_P002	Maize	plastid	92.37	75.16
KRH53243	Soybean	cytosol, endoplasmic reticulum	73.66	73.11
GSMUA_Achr8P31000_001	Banana	cytosol	17.18	71.43
CDY30019	Canola	plasma membrane	81.68	70.86
GSMUA_Achr4P16480_001	Banana	cytosol	8.4	68.75
KRH37543	Soybean	cytosol	46.18	56.28
Bra026324.1-P	Field mustard	cytosol	18.32	53.33
CDY52999	Canola	cytosol	18.32	53.33
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	45.42	43.27

Protein Annotations

MapMan:17.1.3.1.4	EntrezGene:4331966	ProteinID:ABF94491.1	EMBL:AC115687	EMBL:AK069251	EMBL:AK104243
ProteinID:BAF11203.1	ProteinID:BAS82813.1	ProteinID:BAS82814.1	EMBL:D26060	ProteinID:EAZ25948.1	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	HAMAP:MF_03122	EnsemblPlantsGene:Os03g0200500
EnsemblPlants:Os03t0200500-01	UniProt:P49397	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF13
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000016DECF	RefSeq:XP_015631418.1
SEG:seg	:	:	:	:	:

Description

cyc07, T15140S ribosomal protein S3a (CYC07 protein). (Os03t0200500-01);Similar to 40S ribosomal protein S3a. (Os03t0200500-02)

Coordinates

chr3:+:5274929..5277136

Molecular Weight (calculated)

29729.2 Da

IEP (calculated)

10.497

GRAVY (calculated)

-0.510

Length

262 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGSKKKT VDPFAKKDWY DIKAPSVFNV RNIGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDQA YRKIRLRAED VQGKNVLTNF
101: WGMSFTTDKL RSLVKKWQTL IEAHVDVKTT DGYMLRLFCI GFTKRRPNQV KRTCYAQASQ IRQIRRKMVE IMANQASSCD LKELVSKFIP EVIGKEIEKA
201: TSSIFPLQNV FVRKVKILKA PKFDLGKLME VHGDYAKEDI GTKLDRPAED EAMAGQEVAA AE

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.