CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99659	Sorghum	cytosol	99.62	99.62
KXG39941	Sorghum	cytosol	93.92	95.0
Os03t0200500-01	Rice	nucleus	93.16	93.51
OQU92889	Sorghum	cytosol	84.41	92.89
GSMUA_Achr1P22500_001	Banana	cytosol	87.45	88.12
GSMUA_Achr3P30060_001	Banana	cytosol	87.07	87.74
EER99660	Sorghum	cytosol	71.48	86.24
GSMUA_Achr6P24760_001	Banana	cytosol	85.17	86.15
GSMUA_Achr5P08700_001	Banana	cytosol	85.17	85.82
Zm00001d006766_P001	Maize	cytosol	41.83	85.27
KRH77835	Soybean	nucleus	83.27	83.91
CDX76296	Canola	cytosol	83.27	83.91
KRH27653	Soybean	endoplasmic reticulum	83.27	83.91
PGSC0003DMT400069575	Potato	cytosol	83.27	83.91
PGSC0003DMT400019867	Potato	cytosol	82.89	83.85
VIT_05s0020g03900.t01	Wine grape	cytosol	82.89	83.52
KRH35477	Soybean	nucleus	82.89	83.52
Bra034643.1-P	Field mustard	cytosol	82.89	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	82.89	83.52
Solyc09g082520.2.1	Tomato	cytosol, nucleus	82.51	83.46
CDY17474	Canola	cytosol	77.57	83.27
CDY50760	Canola	cytosol	82.89	83.21
CDY41904	Canola	cytosol	82.89	83.21
VIT_14s0030g01810.t01	Wine grape	cytosol	82.51	83.14
KRG91350	Soybean	nucleus	82.51	83.14
PGSC0003DMT400083968	Potato	cytosol	82.51	83.14
Bra040409.1-P	Field mustard	cytosol	82.51	82.82
CDX69078	Canola	cytosol, extracellular	82.51	82.82
CDX75453	Canola	cytosol	82.51	82.82
CDX72495	Canola	cytosol	82.13	82.76
CDY45324	Canola	cytosol, extracellular	82.13	82.76
Bra017669.1-P	Field mustard	cytosol	82.13	82.76
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	82.13	82.76
Bra011551.1-P	Field mustard	cytosol	82.13	82.44
Bra001127.1-P	Field mustard	cytosol	82.13	82.44
Bra040119.1-P	Field mustard	cytosol	81.75	82.38
AT4G34670.1	Thale cress	cytosol	81.75	82.06
CDY40680	Canola	cytosol	81.75	82.06
CDX74165	Canola	cytosol	81.75	82.06
AT3G04840.1	Thale cress	cytosol	81.37	81.68
OQU90205	Sorghum	mitochondrion	86.31	79.09
VIT_05s0094g00620.t01	Wine grape	cytosol	31.18	76.64
KRH53243	Soybean	cytosol, endoplasmic reticulum	74.14	73.86
GSMUA_Achr8P31000_001	Banana	cytosol	17.49	73.02
GSMUA_Achr4P16480_001	Banana	cytosol	8.75	71.88
CDY30019	Canola	plasma membrane	82.51	71.85
KRH37543	Soybean	cytosol	44.49	54.42
CDY52999	Canola	cytosol	18.25	53.33
Bra026324.1-P	Field mustard	cytosol	18.25	53.33
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	44.49	42.55

Protein Annotations

MapMan:17.1.3.1.4	EntrezGene:8060638	UniProt:C5XD91	EnsemblPlants:EER99658	ProteinID:EER99658	ProteinID:EER99658.1
GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF13	InterPro:Ribosomal_S1/3_euk
InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	EnsemblPlantsGene:SORBI_3002G364100	unigene:Sbi.18642	UniParc:UPI0001A83CAD
RefSeq:XP_002463137.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:72504820..72507275

Molecular Weight (calculated)

29852.3 Da

IEP (calculated)

10.463

GRAVY (calculated)

-0.533

Length

263 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKT VDPFSKKDWY DIKAPSVFSV RDIGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQSDEDQA YRKIRLRAED IQGRNVLTNF
101: WGMSFTTDKL RSLVKKWQTL IEAHVDVKTT DNYMLRLFCI GFTKRRPNQV KRTCYAQASQ IRQIRRKMTE IMSNQASTCD LKELVSKFIP EVIGKEIEKA
201: TSSIFPLQNV FIRKVKILKA PKFDIGKLME VHGDYAKEDV GVKMDRPAEG DEAMGGQEVA AAE

Best Arabidopsis Sequence Match ( AT4G34670.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPGSFTN RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDNA YRKIRLRAED VQGRNVLTQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DGYTLRMFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMSE IMVKEASSCD LKELVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLME VHGDYTAEDV GVKVDRPADE TMVEEPTEII GA

Arabidopsis Description

RPS3AB40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:A0A178UZT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.