Factsheet for AT3G04840.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G34670.1	Thale cress	cytosol	94.27	94.27
Bra001127.1-P	Field mustard	cytosol	92.37	92.37
CDX74165	Canola	cytosol	92.37	92.37
CDY40680	Canola	cytosol	92.37	92.37
CDY41904	Canola	cytosol	92.37	92.37
CDY50760	Canola	cytosol	92.37	92.37
Bra040409.1-P	Field mustard	cytosol	91.98	91.98
Bra040119.1-P	Field mustard	cytosol	90.46	90.8
KRG91350	Soybean	nucleus	84.73	85.06
PGSC0003DMT400019867	Potato	cytosol	84.35	85.0
KRH35477	Soybean	nucleus	84.35	84.67
Solyc09g082520.2.1	Tomato	cytosol, nucleus	83.97	84.62
VIT_05s0020g03900.t01	Wine grape	cytosol	83.97	84.29
KRH77835	Soybean	nucleus	83.97	84.29
KRH27653	Soybean	endoplasmic reticulum	83.59	83.91
GSMUA_Achr3P30060_001	Banana	cytosol	83.21	83.52
VIT_14s0030g01810.t01	Wine grape	cytosol	83.21	83.52
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	83.21	83.52
PGSC0003DMT400069575	Potato	cytosol	83.21	83.52
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	82.82	83.14
PGSC0003DMT400083968	Potato	cytosol	82.44	82.76
GSMUA_Achr1P22500_001	Banana	cytosol	82.06	82.38
GSMUA_Achr6P24760_001	Banana	cytosol	81.68	82.31
EER99659	Sorghum	cytosol	82.06	81.75
Zm00001d048159_P001	Maize	cytosol	80.92	81.54
Zm00001d048157_P001	Maize	cytosol	80.92	81.54
KXG39941	Sorghum	cytosol	80.92	81.54
EER99658	Sorghum	cytosol	81.68	81.37
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	81.68	81.37
GSMUA_Achr5P08700_001	Banana	cytosol	80.92	81.23
OQU92889	Sorghum	cytosol	74.05	81.17
Zm00001d028117_P002	Maize	cytosol	80.53	81.15
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	81.3	80.99
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	81.3	80.99
Os03t0200500-01	Rice	nucleus	80.92	80.92
CDY30019	Canola	plasma membrane	91.22	79.14
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	81.68	78.68
VIT_05s0094g00620.t01	Wine grape	cytosol	31.68	77.57
EER99660	Sorghum	cytosol	62.21	74.77
HORVU4Hr1G070370.1	Barley	cytosol, plastid	80.53	73.01
Zm00001d006766_P001	Maize	cytosol	35.88	72.87
KRH53243	Soybean	cytosol, endoplasmic reticulum	73.28	72.73
HORVU1Hr1G032060.4	Barley	cytosol	79.39	71.97
OQU90205	Sorghum	mitochondrion	72.9	66.55
Zm00001d048158_P002	Maize	plastid	80.92	65.84
Bra026324.1-P	Field mustard	cytosol	22.52	65.56
CDY52999	Canola	cytosol	22.52	65.56
HORVU6Hr1G080910.1	Barley	cytosol	21.76	64.04
GSMUA_Achr8P31000_001	Banana	cytosol	15.27	63.49
GSMUA_Achr4P16480_001	Banana	cytosol	7.25	59.38
KRH37543	Soybean	cytosol	43.13	52.56
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	43.13	41.09

Protein Annotations

MapMan:17.1.3.1.4	EntrezGene:819644	UniProt:A0A178VBG6	ProteinID:AAG51414.1	ProteinID:AEE74143.1	ArrayExpress:AT3G04840
EnsemblPlantsGene:AT3G04840	RefSeq:AT3G04840	TAIR:AT3G04840	RefSeq:AT3G04840-TAIR-G	EnsemblPlants:AT3G04840.1	TAIR:AT3G04840.1
EMBL:AY062796	EMBL:AY081585	EMBL:AY085787	Unigene:At.27445	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0005886	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626
GO:GO:0022627	GO:GO:0030529	GO:GO:0042788	HAMAP:MF_03122	RefSeq:NP_187135.1	ProteinID:OAP03018.1
PFAM:PF01015	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0005020	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF12	UniProt:Q9CAV0
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	UniParc:UPI000009EB6C	SEG:seg

Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]

Coordinates

chr3:+:1329571..1331642

Molecular Weight (calculated)

29852.3 Da

IEP (calculated)

10.420

GRAVY (calculated)

-0.522

Length

262 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.