Factsheet for Solyc09g082520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019867	Potato	cytosol	99.23	99.23
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	90.0	89.66
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	88.85	88.51
KRG91350	Soybean	nucleus	88.08	87.74
KRH27653	Soybean	endoplasmic reticulum	88.08	87.74
KRH35477	Soybean	nucleus	88.08	87.74
KRH77835	Soybean	nucleus	88.08	87.74
GSMUA_Achr3P30060_001	Banana	cytosol	86.54	86.21
VIT_05s0020g03900.t01	Wine grape	cytosol	86.15	85.82
GSMUA_Achr6P24760_001	Banana	cytosol	85.38	85.38
CDX75453	Canola	cytosol	85.77	85.11
CDX72495	Canola	cytosol	85.38	85.06
CDX76296	Canola	cytosol	85.38	85.06
Bra017669.1-P	Field mustard	cytosol	85.38	85.06
CDY45324	Canola	cytosol, extracellular	85.38	85.06
CDX69078	Canola	cytosol, extracellular	85.38	84.73
Bra011551.1-P	Field mustard	cytosol	85.38	84.73
Bra034643.1-P	Field mustard	cytosol	85.0	84.67
GSMUA_Achr5P08700_001	Banana	cytosol	85.0	84.67
CDY17474	Canola	cytosol	79.23	84.08
AT4G34670.1	Thale cress	cytosol	84.62	83.97
AT3G04840.1	Thale cress	cytosol	84.62	83.97
GSMUA_Achr1P22500_001	Banana	cytosol	84.23	83.91
Os03t0200500-01	Rice	nucleus	83.85	83.21
EER99659	Sorghum	cytosol	83.85	82.89
CDY41904	Canola	cytosol	83.46	82.82
CDY50760	Canola	cytosol	83.46	82.82
EER99658	Sorghum	cytosol	83.46	82.51
Bra040409.1-P	Field mustard	cytosol	83.08	82.44
Bra040119.1-P	Field mustard	cytosol	82.69	82.38
Zm00001d048159_P001	Maize	cytosol	82.31	82.31
Zm00001d048157_P001	Maize	cytosol	82.31	82.31
KXG39941	Sorghum	cytosol	82.31	82.31
OQU92889	Sorghum	cytosol	75.38	82.01
Zm00001d028117_P002	Maize	cytosol	81.92	81.92
CDY40680	Canola	cytosol	82.31	81.68
CDX74165	Canola	cytosol	82.31	81.68
Bra001127.1-P	Field mustard	cytosol	82.31	81.68
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	82.31	81.37
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	82.31	81.37
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	81.92	80.99
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.69	79.04
KRH53243	Soybean	cytosol, endoplasmic reticulum	76.92	75.76
GSMUA_Achr4P16480_001	Banana	cytosol	9.23	75.0
EER99660	Sorghum	cytosol	62.31	74.31
HORVU4Hr1G070370.1	Barley	cytosol, plastid	81.92	73.7
Zm00001d006766_P001	Maize	cytosol	36.54	73.64
HORVU1Hr1G032060.4	Barley	cytosol	80.0	71.97
CDY30019	Canola	plasma membrane	82.69	71.19
GSMUA_Achr8P31000_001	Banana	cytosol	16.54	68.25
OQU90205	Sorghum	mitochondrion	74.62	67.6
Zm00001d048158_P002	Maize	plastid	82.31	66.46
HORVU6Hr1G080910.1	Barley	cytosol	20.38	59.55
CDY52999	Canola	cytosol	20.0	57.78
Bra026324.1-P	Field mustard	cytosol	20.0	57.78
KRH37543	Soybean	cytosol	44.62	53.95
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	44.23	41.82

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	UniProt:K4CVM9	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830
PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	EnsemblPlantsGene:Solyc09g082520.2
EnsemblPlants:Solyc09g082520.2.1	UniParc:UPI000276C153	SEG:seg	:	:	:

Description

40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:K4CVM9]

Coordinates

chr9:-:68244185..68246966

Molecular Weight (calculated)

29588.9 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.607

Length

260 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPYAKKDWY DIKAPSVFGV RNVGKTLVTR TQGTKIASEG LKHRVFEVSL ADLQNDEDHS FRKIRLRAED VQGRNVLTNF
101: HGMDFTTDKL RSLVKKWQSL IEAHVDVKTT DSYTLRMFCI GFTKKRPNQQ KRTCYAQSSQ IRQIRRKMRE IMVNQAQSCD LKDLALKFIP ESIGREIEKA
201: TSSIYPLQNV FIRKVKILKA PKFDLGRLME VHGDYSEDVG VKVDRPAEDI ATEPTEVVGA

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.