Factsheet for GSMUA_Achr3P30060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08700_001	Banana	cytosol	93.49	93.49
GSMUA_Achr1P22500_001	Banana	cytosol	92.72	92.72
GSMUA_Achr6P24760_001	Banana	cytosol	92.34	92.69
Os03t0200500-01	Rice	nucleus	88.12	87.79
EER99659	Sorghum	cytosol	88.12	87.45
PGSC0003DMT400019867	Potato	cytosol	86.97	87.31
EER99658	Sorghum	cytosol	87.74	87.07
VIT_14s0030g01810.t01	Wine grape	cytosol	86.97	86.97
KRH77835	Soybean	nucleus	86.97	86.97
Zm00001d048159_P001	Maize	cytosol	86.59	86.92
KXG39941	Sorghum	cytosol	86.59	86.92
Zm00001d048157_P001	Maize	cytosol	86.59	86.92
Solyc09g082520.2.1	Tomato	cytosol, nucleus	86.21	86.54
Zm00001d028117_P002	Maize	cytosol	86.21	86.54
KRG91350	Soybean	nucleus	86.21	86.21
PGSC0003DMT400069575	Potato	cytosol	86.21	86.21
KRH27653	Soybean	endoplasmic reticulum	86.21	86.21
KRH35477	Soybean	nucleus	86.21	86.21
OQU92889	Sorghum	cytosol	78.93	86.19
PGSC0003DMT400083968	Potato	cytosol	85.82	85.82
Solyc06g072490.2.1	Tomato	cytosol, nucleus, plastid, unclear	85.82	85.82
VIT_05s0020g03900.t01	Wine grape	cytosol	85.82	85.82
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	86.21	85.55
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	86.21	85.55
Solyc03g097900.2.1	Tomato	cytosol, nucleus, unclear	85.44	85.44
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	85.82	85.17
CDY50760	Canola	cytosol	83.91	83.59
CDY41904	Canola	cytosol	83.91	83.59
Bra040119.1-P	Field mustard	cytosol	83.52	83.52
AT4G34670.1	Thale cress	cytosol	83.52	83.21
AT3G04840.1	Thale cress	cytosol	83.52	83.21
Bra001127.1-P	Field mustard	cytosol	83.52	83.21
Bra040409.1-P	Field mustard	cytosol	83.52	83.21
CDX69078	Canola	cytosol, extracellular	83.52	83.21
CDX75453	Canola	cytosol	83.52	83.21
Bra017669.1-P	Field mustard	cytosol	83.14	83.14
CDX72495	Canola	cytosol	83.14	83.14
CDY45324	Canola	cytosol, extracellular	83.14	83.14
Bra011551.1-P	Field mustard	cytosol	83.14	82.82
CDX76296	Canola	cytosol	82.76	82.76
CDX74165	Canola	cytosol	82.76	82.44
CDY40680	Canola	cytosol	82.76	82.44
Bra034643.1-P	Field mustard	cytosol	82.38	82.38
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	85.82	82.35
CDY17474	Canola	cytosol	77.01	82.04
VIT_05s0094g00620.t01	Wine grape	cytosol	33.33	81.31
Zm00001d006766_P001	Maize	cytosol	38.7	78.29
EER99660	Sorghum	cytosol	65.13	77.98
HORVU1Hr1G032060.4	Barley	cytosol	85.82	77.51
HORVU4Hr1G070370.1	Barley	cytosol, plastid	85.82	77.51
KRH53243	Soybean	cytosol, endoplasmic reticulum	75.86	75.0
GSMUA_Achr4P16480_001	Banana	cytosol	9.2	75.0
GSMUA_Achr8P31000_001	Banana	cytosol	17.62	73.02
CDY30019	Canola	plasma membrane	83.52	72.19
OQU90205	Sorghum	mitochondrion	78.93	71.78
Zm00001d048158_P002	Maize	plastid	86.59	70.19
HORVU6Hr1G080910.1	Barley	cytosol	22.22	65.17
KRH37543	Soybean	cytosol	47.13	57.21
CDY52999	Canola	cytosol	19.16	55.56
Bra026324.1-P	Field mustard	cytosol	19.16	55.56
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	48.28	45.82

Protein Annotations

MapMan:17.1.3.1.4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr3G30060_001	EnsemblPlants:GSMUA_Achr3P30060_001	EnsemblPlants:GSMUA_Achr3T30060_001	UniProt:M0SJ22	HAMAP:MF_03122	PFAM:PF01015
ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14	InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS
SMART:SM01397	UniParc:UPI00029556CA	SEG:seg	:	:	:

Description

40S ribosomal protein S3a [Source:GMGC_GENE;Acc:GSMUA_Achr3G30060_001]

Coordinates

chr3:+:28940373..28944169

Molecular Weight (calculated)

29872.5 Da

IEP (calculated)

10.513

GRAVY (calculated)

-0.539

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA VDPFAKKDWY DIKAPSVFNV RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQNDEDQA HRKIRLRAED VQGKNVLTNF
101: WGMDLTTDKV RYLVRKWQTL IEAHVDVKTT DNYTLRLFCF GFTKRRPNQV KRTCYAQSSQ IRQIRRKMRE IMVNQASSCD LKDLVLKFIP EVIGKEIEKA
201: TASIFPLQNV FIRKVKILKA PKFDLGKLME VHGDYKEDVG VKMERPAEDV QMEGEAEVVG A

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.