Factsheet for VIT_05s0020g03900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34670.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01810.t01	Wine grape	cytosol	91.95	91.95
KRG91350	Soybean	nucleus	88.89	88.89
KRH35477	Soybean	nucleus	88.89	88.89
KRH77835	Soybean	nucleus	88.12	88.12
KRH27653	Soybean	endoplasmic reticulum	87.74	87.74
PGSC0003DMT400019867	Potato	cytosol	86.21	86.54
Solyc09g082520.2.1	Tomato	cytosol, nucleus	85.82	86.15
GSMUA_Achr3P30060_001	Banana	cytosol	85.82	85.82
Bra040119.1-P	Field mustard	cytosol	85.44	85.44
CDY50760	Canola	cytosol	85.06	84.73
CDY41904	Canola	cytosol	85.06	84.73
CDX75453	Canola	cytosol	85.06	84.73
GSMUA_Achr1P22500_001	Banana	cytosol	84.67	84.67
CDY45324	Canola	cytosol, extracellular	84.67	84.67
CDX72495	Canola	cytosol	84.67	84.67
Bra017669.1-P	Field mustard	cytosol	84.67	84.67
CDX74165	Canola	cytosol	84.67	84.35
CDY40680	Canola	cytosol	84.67	84.35
CDX69078	Canola	cytosol, extracellular	84.67	84.35
Bra040409.1-P	Field mustard	cytosol	84.67	84.35
Bra011551.1-P	Field mustard	cytosol	84.67	84.35
Bra001127.1-P	Field mustard	cytosol	84.67	84.35
AT4G34670.1	Thale cress	cytosol	84.67	84.35
GSMUA_Achr5P08700_001	Banana	cytosol	84.29	84.29
Zm00001d048157_P001	Maize	cytosol	83.91	84.23
AT3G04840.1	Thale cress	cytosol	84.29	83.97
KXG39941	Sorghum	cytosol	83.52	83.85
Zm00001d048159_P001	Maize	cytosol	83.52	83.85
GSMUA_Achr6P24760_001	Banana	cytosol	83.52	83.85
TraesCS4D01G260400.1	Wheat	cytosol, golgi, nucleus, unclear	84.29	83.65
TraesCS4B01G260600.1	Wheat	cytosol, nucleus, unclear	84.29	83.65
Os03t0200500-01	Rice	nucleus	83.91	83.59
Zm00001d028117_P002	Maize	cytosol	83.14	83.46
EER99659	Sorghum	cytosol	83.91	83.27
TraesCS4A01G044700.1	Wheat	cytosol, golgi, unclear	83.91	83.27
OQU92889	Sorghum	cytosol	76.25	83.26
CDX76296	Canola	cytosol	83.14	83.14
EER99658	Sorghum	cytosol	83.52	82.89
Bra034643.1-P	Field mustard	cytosol	82.76	82.76
CDY17474	Canola	cytosol	77.39	82.45
VIT_05s0094g00620.t01	Wine grape	cytosol	33.72	82.24
Os02t0287000-02	Rice	cytosol, golgi, nucleus, plasma membrane	82.76	79.41
EER99660	Sorghum	cytosol	64.75	77.52
Zm00001d006766_P001	Maize	cytosol	37.93	76.74
KRH53243	Soybean	cytosol, endoplasmic reticulum	76.63	75.76
HORVU4Hr1G070370.1	Barley	cytosol, plastid	83.52	75.43
CDY30019	Canola	plasma membrane	85.44	73.84
HORVU1Hr1G032060.4	Barley	cytosol	81.61	73.7
GSMUA_Achr8P31000_001	Banana	cytosol	17.24	71.43
OQU90205	Sorghum	mitochondrion	77.39	70.38
Zm00001d048158_P002	Maize	plastid	83.52	67.7
HORVU6Hr1G080910.1	Barley	cytosol	21.46	62.92
KRH37543	Soybean	cytosol	47.13	57.21
CDY52999	Canola	cytosol	19.16	55.56
Bra026324.1-P	Field mustard	cytosol	19.16	55.56
GSMUA_Achr4P16480_001	Banana	cytosol	6.51	53.12
GSMUA_Achr4P16490_001	Banana	cytosol, mitochondrion	44.44	42.18

Protein Annotations

EntrezGene:100249434	wikigene:100249434	MapMan:17.1.3.1.4	UniProt:A5B4K1	EMBL:AM446364	ProteinID:CAN67522
ProteinID:CAN67522.1	ProteinID:CBI26295	ProteinID:CBI26295.3	UniProt:D7T724	EMBL:FN595749	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EntrezGene:LOC100249434
wikigene:LOC100249434	HAMAP:MF_03122	PFAM:PF01015	ScanProsite:PS01191	PANTHER:PTHR11830	PANTHER:PTHR11830:SF14
InterPro:Ribosomal_S1/3_euk	InterPro:Ribosomal_S3Ae	InterPro:Ribosomal_S3Ae_CS	SMART:SM01397	TIGR:TC53548	UniParc:UPI000151FFD4
ArrayExpress:VIT_05s0020g03900	EnsemblPlantsGene:VIT_05s0020g03900	EnsemblPlants:VIT_05s0020g03900.t01	unigene:Vvi.18983	RefSeq:XP_002283142	RefSeq:XP_002283142.1
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:D7T724]

Coordinates

chr5:-:5562499..5566685

Molecular Weight (calculated)

29775.2 Da

IEP (calculated)

10.443

GRAVY (calculated)

-0.574

Length

261 amino acids

Sequence
(BLAST)

001: MAVGKNKRIS KGKKGGKKKA ADPFAKKDWY DIKAPSVFEV RNVGKTLVSR TQGTKIASEG LKHRVFEISL ADLQADEDQA YRKIRLRAED VQGRNVLTNF
101: WGMDFTTDKL RSLVRKWQTL IEAHVDVKTT DNYTLRLFCI AFTKKRVNQN KKTCYAQSSQ IRQIRRKMRE IMTNMATSCD LKELVKKFIP ESIGREIEKA
201: TSSIYPLQNV YIRKVKILKA PKFDLGKLME VHGDYSEDVG TKLERPADEP VAEGVTEVIG A

Best Arabidopsis Sequence Match ( AT3G04840.1 )
(BLAST)

001: MAVGKNKRIS KGRKGGKKKA VDPFSKKDWY DVKAPSIFTH RNVGKTLVSR TQGTKIASEG LKHRVFEVSL ADLQGDEDNA YRKIRLRAED VQGRNVLCQF
101: WGMDFTTDKL RSLVKKWQTL IEAHVDVKTT DSYTLRLFCI AFTKRRANQV KRTCYAQSSQ IRQIRRKMRD IMVREASSCD LKDLVAKFIP EAIGREIEKA
201: TQGIYPLQNV FIRKVKILKA PKFDLGKLMD VHGDYSAEDV GVKVDRPADE MAVEEPTEII GA

Arabidopsis Description

RPS3AA40S ribosomal protein S3a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.